Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0268300 Rhododendron simsii HOM05D002768 ORTHO05D002993 7.9e-38 159.8 75 100.0
Dinv22446 Davidia involucrata HOM05D002768 ORTHO05D002993 6.8e-13 77.0 50 78.0
Dinv34595 Davidia involucrata HOM05D002768 ORTHO05D002993 2.6e-12 75.1 51 76.5
CANSAT01G2421 Cannabis sativa HOM05D002768 ORTHO05D002993 1.3e-11 72.8 51 74.5
TWI12G0491 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 1.3e-11 72.8 50 72.0
TWI75G1788 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 1.3e-11 72.8 50 72.0
Actinidia31881 Actinidia chinensis HOM05D002768 ORTHO05D002993 2.2e-11 72.0 62 66.1
DCAR_014581 Daucus carota HOM05D002768 ORTHO05D002993 2.8e-11 71.6 62 64.5
CiPaw.03G261200 Carya illinoinensis HOM05D002768 ORTHO05D002993 3.7e-11 71.2 51 70.6
Haze_24588 Corylus avellana HOM05D002768 ORTHO05D002993 3.7e-11 71.2 51 70.6
Haze_24592 Corylus avellana HOM05D002768 ORTHO05D002993 3.7e-11 71.2 51 70.6
Actinidia02485 Actinidia chinensis HOM05D002768 ORTHO05D002993 4.8e-11 70.9 62 64.5
CSS0010842 Camellia sinensis var. sinensis HOM05D002768 ORTHO05D002993 4.8e-11 70.9 62 64.5
AUR62011904 Chenopodium quinoa HOM05D002768 ORTHO05D002993 8.3e-11 70.1 51 68.6
AUR62024745 Chenopodium quinoa HOM05D002768 ORTHO05D002993 8.3e-11 70.1 51 68.6
Hma1.2p1_0273F.1_g109980 Hydrangea macrophylla HOM05D002768 ORTHO05D002993 8.3e-11 70.1 51 70.6
Prupe.8G227800 Prunus persica HOM05D002768 ORTHO05D002993 8.3e-11 70.1 50 70.0
GSVIVG01028292001 Vitis vinifera HOM05D002768 ORTHO05D002993 8.3e-11 70.1 51 70.6
COL.COLO4_05595 Corchorus olitorius HOM05D002768 ORTHO05D002993 1.4e-10 69.3 50 72.0
vmacro20766 Vaccinium macrocarpon HOM05D002768 ORTHO05D002993 1.8e-10 68.9 51 70.6
MBI18_g20354_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 2.4e-10 68.6 51 70.6
MD10G1188000 Malus domestica HOM05D002768 ORTHO05D002993 2.4e-10 68.6 50 68.0
PSO675G7618 Papaver somniferum HOM05D002768 ORTHO05D002993 2.4e-10 68.6 50 70.0
Duzib133G0395 Durio zibethinus HOM05D002768 ORTHO05D002993 3.1e-10 68.2 50 72.0
Duzib138G0125 Durio zibethinus HOM05D002768 ORTHO05D002993 3.1e-10 68.2 50 72.0
Sc24g0003070 Simmondsia chinensis HOM05D002055 ORTHO05D002120 3.1e-10 68.2 51 68.6
TAR542G0003 Trochodendron aralioides HOM05D002768 ORTHO05D002993 3.1e-10 68.2 51 68.6
TAR602G0002 Trochodendron aralioides HOM05D002768 ORTHO05D002993 3.1e-10 68.2 51 68.6
CiPaw.04G184600 Carya illinoinensis HOM05D002768 ORTHO05D002993 4.1e-10 67.8 51 68.6
PSO135G1068 Papaver somniferum HOM05D002768 ORTHO05D002993 4.1e-10 67.8 51 68.6
PSO384G1628 Papaver somniferum HOM05D002768 ORTHO05D002993 4.1e-10 67.8 51 68.6
TAR362G0041 Trochodendron aralioides HOM05D002768 ORTHO05D002993 4.1e-10 67.8 50 68.0
TAR636G1486 Trochodendron aralioides HOM05D002768 ORTHO05D002993 4.1e-10 67.8 51 68.6
CDE05G3616 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 5.3e-10 67.4 52 67.3
Eucgr.B01517 Eucalyptus grandis HOM05D002768 ORTHO05D002993 5.3e-10 67.4 51 68.6
Gohir.A11G128900 Gossypium hirsutum HOM05D002768 ORTHO05D002993 5.3e-10 67.4 50 72.0
Gohir.D11G134700 Gossypium hirsutum HOM05D002768 ORTHO05D002993 5.3e-10 67.4 50 72.0
Gorai.007G144100 Gossypium raimondii HOM05D002768 ORTHO05D002993 5.3e-10 67.4 50 72.0
MD05G1201200 Malus domestica HOM05D002768 ORTHO05D002993 5.3e-10 67.4 50 66.0
Aqoxy2G01787 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 7.0e-10 67.0 49 71.4
Ciclev10022892m.g Citrus clementina HOM05D002768 ORTHO05D002993 7.0e-10 67.0 50 68.0
GSVIVG01029089001 Vitis vinifera HOM05D002768 ORTHO05D002993 7.0e-10 67.0 50 68.0
Hund09586 Selenicereus undatus HOM05D002768 ORTHO05D002993 9.1e-10 66.6 51 66.7
Thecc.01G262700 Theobroma cacao HOM05D002768 ORTHO05D002993 9.1e-10 66.6 50 70.0
Atru.chr5.1638 Acer truncatum HOM05D002768 ORTHO05D002993 1.2e-09 66.2 50 66.0
Lsat_1_v5_gn_5_181681 Lactuca sativa HOM05D002768 ORTHO05D002993 1.2e-09 66.2 62 61.3
Lj1g0011004 Lotus japonicus HOM05D002768 ORTHO05D002993 1.2e-09 66.2 52 63.5
Potri.005G221600 Populus trichocarpa HOM05D002768 ORTHO05D002993 1.2e-09 66.2 51 68.6
Ca_09696_v3 Cicer arietinum L. HOM05D002768 ORTHO05D002993 1.6e-09 65.9 54 64.8
ClCG07G000890 Citrullus lanatus HOM05D002768 ORTHO05D002993 1.6e-09 65.9 51 62.7
HanXRQChr01g0014261 Helianthus annuus HOM05D002768 ORTHO05D002993 1.6e-09 65.9 62 61.3
HPP92_015824 Vanilla planifolia HOM05D002768 ORTHO05D002993 1.6e-09 65.9 50 68.0
arahy.Tifrunner.gnm1.ann1.9IC2FY Arachis hypogaea HOM05D002768 ORTHO05D002993 2.0e-09 65.5 52 67.3
Cpa.g.sc50.48 Carica papaya HOM05D002768 ORTHO05D002993 2.0e-09 65.5 51 68.6
Medtr1g070240 Medicago truncatula HOM05D002768 ORTHO05D002993 2.0e-09 65.5 54 64.8
RcHm_v2.0_Chr6g0288881 Rosa chinensis HOM05D002768 ORTHO05D002993 2.0e-09 65.5 50 68.0
MELO3C018066.2 Cucumis melo HOM05D002768 ORTHO05D002993 2.7e-09 65.1 51 62.7
CsaV3_3G022610 Cucumis sativus L. HOM05D002768 ORTHO05D002993 2.7e-09 65.1 51 62.7
ECA248G1647 Erigeron canadensis HOM05D002768 ORTHO05D002993 3.5e-09 64.7 62 59.7
FvH4_2g22020 Fragaria vesca HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 66.0
FAN15G0014 Fragaria x ananassa HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 66.0
FAN20G3068 Fragaria x ananassa HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 66.0
FAN24G3366 Fragaria x ananassa HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 66.0
FAN27G1551 Fragaria x ananassa HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 66.0
Gohir.A07G211000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 68.0
Gohir.D07G217000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 68.0
Gorai.001G251400 Gossypium raimondii HOM05D002768 ORTHO05D002993 3.5e-09 64.7 50 68.0
Lj2A1155T23 Lonicera japonica HOM05D002768 ORTHO05D002993 3.5e-09 64.7 51 66.7
Sabra05G0170500 Salix brachista HOM05D002768 ORTHO05D002993 3.5e-09 64.7 51 66.7
Ah.02g111780 Amaranthus hybridus HOM05D002768 ORTHO05D002993 4.5e-09 64.3 52 61.5
Manes.05G087400 Manihot esculenta HOM05D002768 ORTHO05D002993 4.5e-09 64.3 50 70.0
THA.LOC104822099 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 4.5e-09 64.3 50 64.0
VMungo0720G2804 Vigna mungo HOM05D002768 ORTHO05D002993 4.5e-09 64.3 53 64.2
arahy.Tifrunner.gnm1.ann1.VRQ9RQ Arachis hypogaea HOM05D002768 ORTHO05D002993 5.9e-09 63.9 52 65.4
EL10Ac5g10428 Beta vulgaris HOM05D002768 ORTHO05D002993 5.9e-09 63.9 51 64.7
Carub.0005s2502 Capsella rubella HOM05D002768 ORTHO05D002993 5.9e-09 63.9 50 66.0
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 5.9e-09 63.9 51 64.7
Glyma.03G161000 Glycine max HOM05D002768 ORTHO05D002993 5.9e-09 63.9 52 63.5
Glyma.10G034800 Glycine max HOM05D002768 ORTHO05D002993 5.9e-09 63.9 54 63.0
Glyma.13G121100 Glycine max HOM05D002768 ORTHO05D002993 5.9e-09 63.9 54 63.0
Glyma.19G162700 Glycine max HOM05D002768 ORTHO05D002993 5.9e-09 63.9 57 57.9
Lalb_Chr21g0306161 Lupinus albus HOM05D002768 ORTHO05D002993 5.9e-09 63.9 52 63.5
Potri.002G041500 Populus trichocarpa HOM05D002768 ORTHO05D002993 5.9e-09 63.9 51 66.7
A07p23960 Brassica napus HOM05D002768 ORTHO05D002993 7.7e-09 63.5 50 66.0
Thhalv10006315m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 7.7e-09 63.5 50 66.0
SalBow6G5688 Salvia bowleyana HOM05D002768 ORTHO05D002993 7.7e-09 63.5 45 75.6
Sed0002197 Sechium edule HOM05D002768 ORTHO05D002993 7.7e-09 63.5 51 60.8
BcaB02g07545 Brassica carinata HOM05D002768 ORTHO05D002993 1.0e-08 63.2 51 64.7
BraA07t30047Z Brassica rapa HOM05D002768 ORTHO05D002993 1.0e-08 63.2 46 69.6
Phvul.001G158900 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 1.0e-08 63.2 52 63.5
Sc05g0000790 Simmondsia chinensis HOM05D002768 ORTHO05D002993 1.0e-08 63.2 46 71.7
SGA_v2.0_scaffold21G09479 Striga asiatica HOM05D002768 ORTHO05D002993 1.0e-08 63.2 55 61.8
TPR.G27242 Trifolium pratense HOM05D002768 ORTHO05D002993 1.3e-08 62.8 54 61.1
TAR365G0069 Trochodendron aralioides HOM05D002768 ORTHO05D002993 1.3e-08 62.8 51 64.7
Zm00001eb038830 Zea mays HOM05D002768 ORTHO05D002993 1.3e-08 62.8 50 62.0
AT3G58170 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
BcaC07g40269 Brassica carinata HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
BcaC08g44903 Brassica carinata HOM05D002768 ORTHO05D002993 1.7e-08 62.4 53 62.3
A09p50930 Brassica napus HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
C06p25230 Brassica napus HOM05D002768 ORTHO05D002993 1.7e-08 62.4 53 62.3
C08p33750 Brassica napus HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
BolC6t37682H Brassica oleracea HOM05D002768 ORTHO05D002993 1.7e-08 62.4 53 62.3
BolC8t50974H Brassica oleracea HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
BraA09t40539Z Brassica rapa HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
CARHR168540 Cardamine hirsuta HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 64.0
Nn3g19597 Nelumbo nucifera HOM05D002768 ORTHO05D002993 1.7e-08 62.4 50 62.0
BcaC07g40187 Brassica carinata HOM05D002768 ORTHO05D002993 2.2e-08 62.0 50 62.0
CDE02G4256 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 2.9e-08 61.6 51 60.8
CDE05G3623 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 2.9e-08 61.6 51 60.8
MBI17_g17501_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 2.9e-08 61.6 50 68.0
Manes.01G199100 Manihot esculenta HOM05D002768 ORTHO05D002993 2.9e-08 61.6 50 66.0
Os08g0563300 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 3.8e-08 61.2 49 61.2
Sp5g04550 Schrenkiella parvula HOM05D002768 ORTHO05D002993 3.8e-08 61.2 50 64.0
Zm00001eb259160 Zea mays HOM05D002768 ORTHO05D002993 3.8e-08 61.2 50 64.0
Migut.J00939 Erythranthe guttata HOM05D002768 ORTHO05D002993 5.0e-08 60.8 45 71.1
PSO541G3332 Papaver somniferum HOM05D002768 ORTHO05D002993 5.0e-08 60.8 45 68.9
Peaxi162Scf00018g02019 Petunia axillaris HOM05D002768 ORTHO05D002993 5.0e-08 60.8 47 68.1
Aqoxy1G00263 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 8.5e-08 60.1 49 59.2
Aqoxy335s002 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 8.5e-08 60.1 49 59.2
AL5G39870 Arabidopsis lyrata HOM05D002768 ORTHO05D002993 8.5e-08 60.1 50 62.0
Peaxi162Scf00134g01212 Petunia axillaris HOM05D002768 ORTHO05D002993 8.5e-08 60.1 46 67.4
THA.LOC104802844 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 8.5e-08 60.1 50 62.0
arahy.Tifrunner.gnm1.ann1.IM1D59 Arachis hypogaea HOM05D002768 ORTHO05D002993 1.1e-07 59.7 52 63.5
arahy.Tifrunner.gnm1.ann1.XKA0JW Arachis hypogaea HOM05D002768 ORTHO05D002993 1.1e-07 59.7 52 63.5
CAN.G461.7 Capsicum annuum HOM05D002768 ORTHO05D002993 1.1e-07 59.7 46 67.4
Nitab4.5_0000086g0160 Nicotiana tabacum HOM05D002768 ORTHO05D002993 1.1e-07 59.7 46 67.4
Nitab4.5_0011666g0010 Nicotiana tabacum HOM05D002768 ORTHO05D002993 1.1e-07 59.7 46 67.4
Oeu039684.1 Olea europaea HOM05D002768 ORTHO05D002993 1.5e-07 59.3 45 68.9
SGA_v2.0_scaffold385G50445 Striga asiatica HOM05D002768 ORTHO05D002993 1.9e-07 58.9 46 67.4
Nitab4.5_0000326g0040 Nicotiana tabacum HOM05D002768 ORTHO05D002993 2.5e-07 58.5 46 65.2
Solyc06g008520.4 Solanum lycopersicum HOM05D002768 ORTHO05D002993 2.5e-07 58.5 47 63.8
Sopen06g003290 Solanum pennellii HOM05D002768 ORTHO05D002993 2.5e-07 58.5 47 63.8
PGSC0003DMG400010893 Solanum tuberosum HOM05D002768 ORTHO05D002993 2.5e-07 58.5 47 63.8
PGSC0003DMG400031428 Solanum tuberosum HOM05D002768 ORTHO05D002993 2.5e-07 58.5 46 65.2
Aa31LG10G12890 Aethionema arabicum HOM05D002768 ORTHO05D002993 3.2e-07 58.2 44 68.2
Nn6g34823 Nelumbo nucifera HOM05D002768 ORTHO05D002993 3.2e-07 58.2 49 61.2
ATR0763G011 Amborella trichopoda HOM05D002768 ORTHO05D002993 4.2e-07 57.8 51 62.7
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 4.2e-07 57.8 51 62.7
arahy.Tifrunner.gnm1.ann1.8827VP Arachis hypogaea HOM05D000211 ORTHO05D011198 4.2e-07 57.8 51 62.7
arahy.Tifrunner.gnm1.ann1.JQ3F04 Arachis hypogaea HOM05D002768 ORTHO05D002993 4.2e-07 57.8 51 62.7
arahy.Tifrunner.gnm1.ann1.V2BS34 Arachis hypogaea HOM05D002768 ORTHO05D002993 4.2e-07 57.8 51 62.7
SHI09877 Sapria himalayana HOM05D002768 ORTHO05D002993 4.2e-07 57.8 47 59.6
arahy.Tifrunner.gnm1.ann1.HAI34B Arachis hypogaea HOM05D005194 ORTHO05D003357 5.5e-07 57.4 51 62.7
Nitab4.5_0001327g0100 Nicotiana tabacum HOM05D002768 ORTHO05D002993 5.5e-07 57.4 46 65.2
unitig_8.g4276 Utricularia gibba HOM05D002768 ORTHO05D002993 5.5e-07 57.4 44 65.9
ClCG06G006820 Citrullus lanatus HOM05D002768 ORTHO05D002993 7.2e-07 57.0 49 57.1
Prupe.1G034500 Prunus persica HOM05D002768 ORTHO05D002993 9.4e-07 56.6 50 52.0
QL06p016605 Quercus lobata HOM05D002768 ORTHO05D002993 9.4e-07 56.6 50 52.0
ATR0789G106 Amborella trichopoda HOM05D002768 ORTHO05D002993 2.1e-06 55.5 50 62.0
Migut.L01551 Erythranthe guttata HOM05D002768 ORTHO05D002993 2.1e-06 55.5 45 64.4
Nn5g27788 Nelumbo nucifera HOM05D002768 ORTHO05D002993 2.1e-06 55.5 51 60.8
Os02g0820700 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 2.7e-06 55.1 44 65.9
Phvul.007G146500 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 2.7e-06 55.1 53 54.7
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.6e-06 54.7 52 51.9
Cc03_g05090 Coffea canephora HOM05D002768 ORTHO05D002993 3.6e-06 54.7 48 56.2
MELO3C012982.2 Cucumis melo HOM05D002768 ORTHO05D002993 3.6e-06 54.7 48 56.2
CsaV3_3G023820 Cucumis sativus L. HOM05D002768 ORTHO05D002993 3.6e-06 54.7 48 56.2
Manes.15G038000 Manihot esculenta HOM05D002768 ORTHO05D002993 3.6e-06 54.7 51 56.9
Phvul.007G195300 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 3.6e-06 54.7 53 56.6
Dinv44655 Davidia involucrata HOM05D000816 ORTHO05D005265 4.7e-06 54.3 54 55.6
CSS0009501 Camellia sinensis var. sinensis HOM05D002768 ORTHO05D002993 6.1e-06 53.9 47 63.8
Cc01_g18540 Coffea canephora HOM05D002768 ORTHO05D002993 6.1e-06 53.9 45 62.2
COL.COLO4_15824 Corchorus olitorius HOM05D002768 ORTHO05D002993 6.1e-06 53.9 53 54.7
Duzib212G0529 Durio zibethinus HOM05D002768 ORTHO05D002993 6.1e-06 53.9 53 52.8
Gohir.A09G224600 Gossypium hirsutum HOM05D002768 ORTHO05D002993 6.1e-06 53.9 53 52.8
MD13G1210000 Malus domestica HOM05D002768 ORTHO05D002993 6.1e-06 53.9 50 48.0
Sed0005455 Sechium edule HOM05D002768 ORTHO05D002993 6.1e-06 53.9 49 55.1
Gohir.D09G226400 Gossypium hirsutum HOM05D002768 ORTHO05D002993 8.0e-06 53.5 53 52.8
Gorai.006G248000 Gossypium raimondii HOM05D002768 ORTHO05D002993 8.0e-06 53.5 53 52.8


User provided reference genes

Program Settings