Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 0.0e+00 1756.9 893 100.0
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 0.0e+00 1174.1 1027 64.0
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1114.4 956 64.7
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 0.0e+00 1098.2 955 63.6
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 6.1e-312 1073.5 961 62.9
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 3.2e-279 965.3 962 55.3
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.8e-274 949.5 954 56.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 5.3e-274 948.0 951 55.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-273 946.0 950 55.1
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.1e-270 936.0 906 56.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 3.1e-266 922.2 939 54.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.0e-264 917.1 951 53.6
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.2e-264 916.0 948 54.2
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 3.8e-264 915.2 907 54.7
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.7e-262 909.1 955 53.6
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.6e-262 908.7 937 52.8
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.4e-261 906.7 964 53.2
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.0e-261 905.2 941 53.3
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.5e-260 903.3 945 53.4
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.0e-260 902.9 946 51.7
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 8.3e-259 897.5 944 52.2
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 9.1e-258 894.0 954 52.0
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 2.0e-257 892.9 953 52.4
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.7e-257 891.0 948 53.0
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 7.2e-255 884.4 958 52.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 8.9e-253 877.5 946 52.6
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 2.2e-251 872.8 954 51.7
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.8e-251 872.5 952 51.4
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.8e-251 872.5 942 52.5
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 2.4e-250 869.4 885 56.7
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.4e-250 869.4 875 53.9
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 9.2e-250 867.5 956 52.4
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.2e-249 867.1 945 52.2
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.2e-249 867.1 944 51.6
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 4.5e-249 865.1 882 54.6
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 5.9e-249 864.8 884 54.3
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.0e-248 864.0 959 51.6
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.9e-248 862.4 959 52.2
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 6.6e-248 861.3 940 51.8
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 7.3e-247 857.8 951 51.0
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 2.8e-246 855.9 955 51.3
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.4e-245 853.6 821 56.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 2.0e-244 849.7 900 52.4
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.5e-241 839.0 905 53.1
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 7.3e-239 831.2 895 51.3
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 3.1e-237 825.9 921 51.0
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 5.2e-237 825.1 921 50.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 5.2e-237 825.1 968 49.3
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 4.4e-236 822.0 973 48.8
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 7.5e-236 821.2 895 51.7
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.6e-233 813.5 880 52.0
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.7e-233 812.8 900 50.4
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 3.5e-233 812.4 950 49.9
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.0e-232 809.3 901 49.6
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.6e-230 803.5 904 49.4
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.6e-230 802.4 897 49.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 7.5e-228 794.7 881 50.3
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.3e-227 793.9 962 48.8
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.3e-227 793.9 957 48.2
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.6e-225 785.4 875 51.2
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 5.1e-224 781.9 901 48.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 4.7e-222 775.4 936 47.5
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 8.1e-222 774.6 878 50.1
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.4e-221 773.1 944 47.4
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 6.8e-221 771.5 934 48.9
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.2e-220 770.8 916 47.8
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.2e-219 766.5 879 50.6
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 7.1e-218 761.5 891 47.8
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.1e-213 747.7 875 48.2
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.8e-213 746.9 946 45.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-212 744.2 871 47.9
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.0e-212 743.4 895 48.0
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.0e-212 743.4 742 54.2
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.4e-212 742.3 867 49.5
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 5.8e-212 741.9 904 47.1
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 9.3e-210 734.6 946 45.3
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 4.3e-207 725.7 854 47.8
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.5e-204 717.2 892 46.4
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.5e-201 706.1 902 47.0
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.5e-199 700.7 642 58.6
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.5e-199 700.7 698 55.2
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.3e-199 699.1 942 44.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 7.4e-199 698.4 728 53.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 9.6e-199 698.0 856 47.2
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-197 692.6 737 53.2
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.9e-194 683.7 1196 38.6
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 8.2e-190 668.3 893 44.5
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.5e-186 656.8 769 47.6
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.9e-183 647.1 941 41.7
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.9e-178 630.6 896 42.6
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 5.5e-178 629.0 897 42.9
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.4e-176 624.4 735 49.7
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 4.1e-173 612.8 941 41.0
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-170 604.0 691 52.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.0e-163 581.6 516 59.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 5.7e-159 565.8 656 48.2
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-146 524.6 582 52.2
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 9.4e-146 521.9 957 37.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.6e-135 487.3 936 34.5
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.1e-133 481.9 926 37.8
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.0e-131 473.0 465 54.6
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-129 468.4 499 51.7
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.8e-128 464.5 510 50.0
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-125 454.1 539 48.8
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 2.2e-118 431.0 486 52.7
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 8.9e-112 409.1 480 45.8
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.5e-111 408.3 400 53.5
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 4.4e-111 406.8 881 33.4
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 2.9e-110 404.1 487 50.1
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.3e-99 368.6 219 78.1
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.3e-99 368.6 219 78.1
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-96 359.0 223 76.7
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-95 354.8 406 50.2
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.3e-91 342.0 470 46.2
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.6e-90 336.7 418 48.8
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 9.6e-90 335.9 352 52.8
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-89 334.7 270 64.1
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 5.8e-87 326.6 396 49.2
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.6e-84 318.5 794 31.5
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.6e-84 317.0 481 45.3
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 4.0e-80 303.9 417 44.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-78 298.1 264 60.6
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 3.2e-77 294.3 529 35.7
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.0e-70 272.7 322 48.8
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.5e-66 258.1 323 47.7
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.6e-65 255.4 530 33.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 8.2e-65 253.1 635 32.1
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-63 249.2 240 57.5
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.2e-57 226.5 244 48.8
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.0e-51 209.5 486 30.0
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.4e-50 203.4 172 59.3
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.3e-43 181.8 246 46.3
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-42 179.1 256 41.4
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-39 169.1 326 37.7
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.0e-38 166.4 366 32.5
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.9e-37 162.2 137 55.5
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 7.0e-32 143.7 192 46.9
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.2e-29 134.8 170 47.6
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 9.5e-29 133.3 170 47.1
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-28 131.3 137 54.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.0e-27 128.3 188 39.4
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 5.9e-23 114.0 78 74.4
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.3e-22 112.8 138 46.4
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.3e-22 112.8 138 46.4
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-21 108.6 79 69.6
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 4.0e-19 101.3 598 23.6
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.7e-14 85.9 154 37.0
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 5.0e-14 84.3 131 38.9
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 6.6e-14 84.0 75 48.0
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.6e-12 79.3 197 33.5
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.1e-11 75.1 45 75.6
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.0e-10 72.4 107 41.1
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 1.1e-08 66.6 63 55.6
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.4e-08 65.5 150 34.0
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.3e-06 58.9 184 28.8
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 6.6e-06 57.4 51 51.0


User provided reference genes

Program Settings