Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 6.0e-212 740.7 412 100.0
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.2e-167 593.6 354 90.1
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.4e-165 586.6 366 88.5
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-161 573.2 366 83.9
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-161 573.2 366 83.9
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 6.3e-161 571.2 366 85.2
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.5e-159 566.6 366 85.8
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 7.7e-159 564.3 366 85.0
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.2e-158 562.8 366 87.7
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 3.8e-158 562.0 366 85.0
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 8.5e-158 560.8 366 82.2
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.1e-157 560.5 366 86.1
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.9e-157 559.7 374 81.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 3.2e-157 558.9 366 85.8
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 9.4e-157 557.4 365 83.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.6e-156 556.6 366 82.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 2.7e-156 555.8 366 83.1
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 7.9e-156 554.3 366 82.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.4e-155 553.5 365 82.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 2.3e-155 552.7 377 83.8
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 3.0e-155 552.4 368 81.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.0e-155 552.4 366 80.1
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.0e-155 552.4 366 85.0
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.0e-155 552.4 366 80.3
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 8.8e-155 550.8 363 82.1
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 3.3e-154 548.9 367 79.8
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 3.3e-154 548.9 366 83.6
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.3e-154 548.5 366 80.9
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 4.3e-154 548.5 365 84.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.3e-153 547.0 367 83.9
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.3e-153 547.0 366 80.1
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.7e-153 546.6 366 79.5
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.7e-153 546.6 370 79.2
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.7e-153 546.6 366 83.6
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.2e-153 546.2 366 79.5
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 3.7e-153 545.4 366 80.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 3.7e-153 545.4 366 84.2
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 6.3e-153 544.7 366 79.5
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 8.2e-153 544.3 354 85.6
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.4e-152 543.5 362 80.7
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 5.3e-152 541.6 367 78.7
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.2e-151 540.4 364 83.5
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.6e-151 539.3 367 79.0
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.0e-150 537.3 367 79.8
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.7e-150 536.6 367 83.1
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 2.5e-149 532.7 361 79.2
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.5e-149 531.6 368 81.2
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 7.2e-149 531.2 368 81.5
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 9.4e-149 530.8 345 81.2
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.6e-148 530.0 367 83.9
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.6e-148 530.0 367 83.9
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 2.1e-148 529.6 364 84.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.6e-146 522.7 364 85.4
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 9.7e-146 520.8 366 76.2
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 9.7e-146 520.8 351 80.6
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-145 520.0 368 78.0
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.1e-144 517.3 368 79.1
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.8e-144 516.5 353 83.3
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.8e-144 516.5 362 79.6
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 4.1e-144 515.4 354 84.2
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.1e-144 515.4 351 80.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.5e-143 513.5 366 78.4
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.0e-143 513.1 367 81.7
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.3e-142 510.4 366 80.1
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-142 509.2 351 83.5
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 5.0e-142 508.4 366 79.0
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 8.5e-142 507.7 361 78.9
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.1e-141 507.3 351 80.3
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 5.5e-141 505.0 363 79.9
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 9.4e-141 504.2 366 79.2
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.6e-140 503.4 345 78.6
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.6e-140 503.4 366 78.1
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 3.0e-139 499.2 366 76.0
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 4.0e-139 498.8 364 77.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 6.7e-139 498.0 364 77.5
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.7e-139 498.0 366 77.0
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.5e-138 496.9 366 76.8
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.3e-138 495.7 361 78.4
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 4.4e-138 495.4 374 75.7
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.7e-137 493.4 344 80.2
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.8e-137 492.7 366 73.2
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 3.7e-137 492.3 365 80.3
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 4.8e-137 491.9 342 80.4
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 4.8e-137 491.9 343 80.2
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.1e-136 490.7 339 83.5
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.4e-136 490.3 353 79.9
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 4.1e-136 488.8 366 73.5
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 4.1e-136 488.8 366 77.9
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.3e-136 488.4 363 78.2
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.2e-135 487.3 366 73.0
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 7.7e-135 484.6 347 78.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-133 480.7 363 73.0
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.9e-133 479.9 373 77.7
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 9.4e-133 477.6 366 74.6
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.6e-132 476.9 403 69.0
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.4e-131 473.8 342 81.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.8e-131 473.4 366 71.0
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.8e-131 473.4 298 87.6
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.3e-131 473.0 360 75.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 3.7e-129 465.7 353 76.8
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 3.7e-129 465.7 353 76.8
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 3.7e-129 465.7 344 73.5
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.7e-129 465.7 356 78.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 4.8e-129 465.3 357 74.2
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-128 464.2 369 74.5
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.1e-128 464.2 344 76.7
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.4e-128 463.8 313 78.3
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.4e-128 463.0 344 76.5
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 3.1e-128 462.6 360 73.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.9e-127 458.4 361 76.2
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 2.2e-126 456.4 354 72.6
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 8.5e-126 454.5 362 70.7
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.0e-123 447.6 392 64.3
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 5.2e-123 445.3 355 68.5
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.7e-119 433.0 340 77.1
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 8.6e-118 427.9 353 66.3
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 9.5e-117 424.5 379 70.4
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.2e-116 424.1 291 80.4
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.2e-115 418.7 344 64.0
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.2e-114 417.5 319 74.9
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 5.7e-114 415.2 292 84.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-112 410.6 367 70.6
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-111 407.5 348 62.4
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.7e-110 403.7 268 80.2
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 3.0e-110 402.9 291 76.3
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.8e-108 396.4 307 79.8
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.5e-106 388.3 348 60.9
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.6e-100 370.5 299 63.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 2.8e-100 369.8 353 57.8
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 6.2e-100 368.6 342 59.4
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.1e-99 367.9 218 90.4
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.3e-99 366.7 331 59.8
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.8e-98 362.1 352 57.4
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.3e-97 360.9 356 61.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.7e-95 353.2 246 78.9
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.3e-94 350.1 268 71.6
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-91 340.5 224 84.8
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-86 324.3 310 63.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-67 260.8 172 80.8
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.6e-50 202.2 125 85.6
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 6.7e-46 189.1 119 84.0
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-43 181.4 131 77.9
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.4e-40 171.4 119 76.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 6.7e-38 162.5 143 68.5
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.8e-35 154.5 97 83.5
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.0e-30 138.7 105 70.5
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 2.8e-28 130.6 70 87.1
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.8e-28 130.6 70 87.1
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 4.1e-27 126.7 70 85.7
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.4e-19 100.9 80 55.0
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-18 98.2 130 50.0
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 3.8e-17 93.6 58 91.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 8.5e-17 92.4 55 87.3
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-16 91.3 93 55.9
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 7.2e-16 89.4 81 63.0
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.0e-14 85.5 53 90.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.4e-13 80.1 97 52.6
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 9.8e-13 79.0 75 54.7
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.4e-11 74.3 42 85.7
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 3.1e-11 73.9 57 75.4
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.0e-09 68.9 127 41.7
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 2.1e-07 61.2 38 92.1
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 4.7e-07 60.1 78 43.6


User provided reference genes

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