Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.6e-129 466.1 239 100.0
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.1e-84 316.2 239 77.4
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.1e-69 267.3 239 65.3
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.0e-62 241.9 239 60.7
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.3e-61 238.8 239 61.1
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.2e-60 237.3 239 59.0
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 6.4e-57 224.9 239 50.6
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.4e-56 223.8 236 55.9
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.4e-56 223.8 239 51.0
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.9e-56 223.4 236 55.9
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 3.2e-56 222.6 239 57.3
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 3.2e-56 222.6 239 56.1
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 3.2e-56 222.6 239 56.1
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 1.6e-55 220.3 239 55.2
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.1e-55 219.9 239 55.2
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 6.0e-55 218.4 239 50.2
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.7e-54 216.9 239 54.4
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.7e-54 216.9 239 55.2
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.3e-54 216.5 239 56.1
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 3.0e-54 216.1 239 49.0
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 3.0e-54 216.1 239 49.4
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 5.1e-54 215.3 239 49.4
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 5.1e-54 215.3 239 48.5
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 8.6e-54 214.5 239 50.2
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.1e-53 214.2 239 51.0
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.1e-53 214.2 239 49.4
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.5e-53 213.0 239 49.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.5e-53 213.0 236 52.5
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.6e-53 211.8 211 53.1
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 7.3e-53 211.5 239 48.1
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 9.5e-53 211.1 239 49.4
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 9.5e-53 211.1 239 49.0
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.2e-52 210.7 239 47.7
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 2.1e-52 209.9 239 47.7
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.8e-52 209.5 239 48.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.8e-52 209.5 239 47.3
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 2.8e-52 209.5 239 49.0
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 3.6e-52 209.1 239 48.5
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.7e-52 208.8 239 48.5
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 6.2e-52 208.4 239 49.4
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 6.2e-52 208.4 239 46.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 8.1e-52 208.0 239 54.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.4e-51 207.2 239 48.1
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.8e-51 206.8 239 50.2
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.8e-51 206.8 239 48.1
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.4e-51 206.5 239 47.7
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 2.4e-51 206.5 239 51.5
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 4.0e-51 205.7 239 47.7
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 5.2e-51 205.3 239 46.0
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 1.2e-50 204.1 239 47.3
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.2e-50 204.1 239 47.7
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 4.4e-50 202.2 239 52.7
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 5.8e-50 201.8 239 46.4
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 5.8e-50 201.8 239 46.4
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.3e-49 200.7 239 46.4
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.7e-49 200.3 239 46.4
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.7e-49 200.3 239 46.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.7e-49 200.3 239 46.4
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.7e-49 200.3 239 46.0
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.2e-49 199.9 239 49.8
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.2e-49 199.9 238 52.5
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.2e-49 199.9 239 48.1
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.9e-49 199.5 145 75.2
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 3.8e-49 199.1 239 50.2
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 6.4e-49 198.4 240 45.8
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 6.4e-49 198.4 239 46.0
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 8.4e-49 198.0 240 46.7
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.1e-48 197.6 239 46.9
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.4e-48 197.2 239 47.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.9e-48 196.8 239 45.6
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.9e-48 196.8 148 64.2
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-48 196.8 239 46.9
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.9e-48 196.8 259 44.0
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 3.2e-48 196.1 239 46.9
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 5.4e-48 195.3 239 49.8
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 5.4e-48 195.3 239 46.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.1e-48 194.9 239 48.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.6e-47 193.7 239 44.4
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.1e-47 193.4 239 44.8
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 2.1e-47 193.4 239 44.8
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 4.6e-47 192.2 239 45.2
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.0e-46 191.0 239 45.6
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.3e-46 190.7 208 48.6
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.3e-46 190.7 239 45.2
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 2.3e-46 189.9 239 43.9
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 43.9
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 43.9
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 43.9
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 43.9
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 45.2
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.0e-46 189.5 239 44.4
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 5.1e-46 188.7 236 49.6
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 5.1e-46 188.7 239 44.8
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 6.6e-46 188.3 239 43.9
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 8.7e-46 188.0 239 44.4
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 8.7e-46 188.0 239 44.4
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.5e-45 187.2 239 43.5
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.9e-45 186.8 239 43.1
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.5e-45 186.4 156 57.7
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 4.3e-45 185.7 263 42.2
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 9.6e-45 184.5 239 43.9
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.1e-43 181.0 239 42.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.1e-43 181.0 239 42.3
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 1.1e-43 181.0 239 41.8
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 1.4e-43 180.6 238 41.6
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 1.4e-43 180.6 239 42.3
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.2e-43 178.7 239 43.9
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.3e-41 174.1 149 57.7
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.7e-41 173.7 187 49.2
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.2e-41 173.3 147 57.8
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-41 172.2 210 44.3
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-41 172.2 210 44.3
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 4.9e-41 172.2 210 44.3
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.4e-40 169.9 239 41.0
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 2.4e-40 169.9 187 48.1
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.3e-38 164.1 187 46.0
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 7.3e-37 158.3 247 44.9
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.8e-36 156.4 241 39.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.5e-34 150.6 147 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 9.3e-32 141.4 236 35.6
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 1.1e-27 127.9 238 34.0
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 4.0e-27 125.9 160 44.4
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 5.3e-27 125.6 238 34.0
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 1.2e-26 124.4 194 34.0
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.2e-26 124.4 159 42.8
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.2e-26 124.4 242 33.5
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 3.4e-26 122.9 159 42.8
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 4.5e-26 122.5 85 65.9
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.5e-26 122.5 67 79.1
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 6.0e-23 112.1 158 41.8
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 1.1e-21 107.8 75 64.0
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 4.3e-21 105.9 85 72.9
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 4.5e-18 95.9 76 61.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.5e-18 95.9 79 62.0
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 4.9e-17 92.4 102 43.1
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.9e-16 90.5 55 70.9
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.5e-16 89.0 53 71.7
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-13 81.3 48 70.8
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.7e-13 79.0 161 29.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.5e-10 70.9 37 78.4
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.3e-09 67.8 92 33.7
Rhsim03G0260500 Rhododendron simsii HOM05D005031 ORTHO05D339361 5.0e-09 65.9 54 88.9
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.1e-08 64.7 87 40.2


User provided reference genes

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