Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 3.2e-229 798.1 415 100.0
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 7.3e-133 478.0 417 64.0
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 2.7e-127 459.5 370 70.5
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.0e-126 457.6 421 62.2
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.2e-124 450.7 420 61.2
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 1.2e-122 444.1 419 58.9
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 4.6e-119 432.2 412 59.0
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 3.6e-116 422.5 416 57.0
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 9.2e-112 407.9 412 55.8
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 1.2e-111 407.5 410 55.4
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 1.3e-110 404.1 412 56.3
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 2.3e-110 403.3 415 55.2
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 3.0e-110 402.9 412 54.1
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 3.9e-110 402.5 416 55.5
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 2.1e-108 396.7 416 54.3
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.8e-107 393.7 413 54.2
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 1.8e-107 393.7 413 54.2
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 4.0e-107 392.5 416 55.3
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 5.2e-107 392.1 427 51.3
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 2.9e-105 386.3 418 53.3
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 3.8e-105 386.0 413 53.3
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.9e-104 383.6 417 52.5
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 1.6e-103 380.6 456 50.9
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.0e-102 377.9 415 53.5
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 1.9e-101 373.6 459 47.1
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.5e-101 373.2 434 50.7
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 4.3e-101 372.5 417 51.1
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 4.3e-101 372.5 442 50.7
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 5.6e-101 372.1 415 51.6
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.8e-99 367.1 445 49.9
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 9.9e-98 361.3 397 52.6
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 1.9e-96 357.1 417 50.8
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 1.9e-96 357.1 418 51.0
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 5.4e-96 355.5 416 50.2
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 5.4e-96 355.5 421 50.8
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 4.6e-95 352.4 367 53.1
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 1.8e-94 350.5 345 57.1
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 2.3e-94 350.1 392 51.3
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 6.7e-94 348.6 418 50.2
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 8.7e-94 348.2 420 49.5
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 3.3e-93 346.3 420 48.6
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 5.6e-93 345.5 419 49.6
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 9.6e-93 344.7 416 49.3
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 2.8e-92 343.2 413 46.7
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 4.0e-91 339.3 390 50.0
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 3.4e-90 336.3 442 47.3
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 2.9e-89 333.2 430 47.0
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 1.1e-88 331.3 422 46.7
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 7.1e-88 328.6 414 47.3
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 7.1e-88 328.6 420 47.1
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 1.6e-87 327.4 412 48.5
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 1.5e-85 320.9 372 47.8
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.5e-85 320.1 413 47.7
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 5.6e-85 318.9 369 49.9
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 7.4e-85 318.5 447 44.5
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 2.1e-84 317.0 399 46.9
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 4.0e-83 312.8 406 42.4
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 4.0e-83 312.8 406 42.4
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 7.6e-82 308.5 414 44.0
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 1.1e-80 304.7 401 46.4
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 5.5e-80 302.4 347 51.0
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 7.1e-80 302.0 513 38.8
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 9.3e-80 301.6 427 42.2
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 9.3e-80 301.6 416 41.8
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 1.2e-79 301.2 439 43.5
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 2.7e-79 300.1 421 42.0
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 2.7e-79 300.1 394 43.1
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 4.6e-79 299.3 414 43.5
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 6.7e-78 295.4 364 45.6
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 4.3e-77 292.7 439 41.9
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 7.4e-77 292.0 419 41.5
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.3e-76 291.2 455 40.9
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 2.8e-76 290.0 335 52.2
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.8e-76 290.0 418 43.8
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 1.4e-75 287.7 342 48.2
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 3.1e-75 286.6 372 48.1
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 2.0e-74 283.9 423 43.3
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 2.0e-74 283.9 330 50.6
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 1.0e-73 281.6 420 41.4
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 6.5e-73 278.9 427 41.7
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 3.2e-72 276.6 397 43.6
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 1.3e-70 271.2 392 39.8
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 2.3e-70 270.4 402 42.5
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 3.9e-70 269.6 388 39.9
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 5.7e-69 265.8 422 38.6
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.5e-64 250.4 353 43.1
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 2.5e-64 250.4 353 43.1
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 3.6e-63 246.5 389 38.3
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 5.3e-59 232.6 172 68.6
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 1.2e-58 231.5 418 36.4
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 6.5e-57 225.7 177 62.1
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.2e-55 221.5 330 42.4
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 5.2e-54 216.1 463 35.9
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 8.2e-52 208.8 161 62.7
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 4.1e-51 206.5 303 41.3
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 5.0e-49 199.5 303 39.9
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 1.5e-45 188.0 298 38.3
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 3.3e-45 186.8 145 63.4
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 4.2e-40 169.9 163 56.4
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 2.8e-36 157.1 314 37.6
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 4.8e-36 156.4 175 53.1
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 4.1e-35 153.3 115 68.7
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 1.3e-25 121.7 90 68.9
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 1.3e-25 121.7 90 68.9
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 3.0e-22 110.5 144 46.5
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 2.3e-17 94.4 129 47.3
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 3.0e-17 94.0 161 38.5
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 4.3e-16 90.1 158 37.3
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 5.0e-09 66.6 87 39.1
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 2.3e-06 57.8 61 49.2


User provided reference genes

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