Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0246800 Rhododendron simsii HOM05D002931 ORTHO05D003273 0.0e+00 1280.0 670 100.0
Rhsim03G0246600 Rhododendron simsii HOM05D002931 ORTHO05D003273 1.4e-88 331.6 432 54.2
Rhsim03G0246700 Rhododendron simsii HOM05D002931 ORTHO05D003273 1.1e-82 312.0 317 64.7
vmacro06178 Vaccinium macrocarpon HOM05D002931 ORTHO05D003273 6.2e-49 199.9 341 41.9
Actinidia26402 Actinidia chinensis HOM05D002931 ORTHO05D003273 1.1e-45 189.1 413 42.4
Actinidia07433 Actinidia chinensis HOM05D002931 ORTHO05D003273 1.3e-43 182.2 422 41.0
Rhsim12G0182000 Rhododendron simsii HOM05D002931 ORTHO05D003273 1.6e-41 175.3 111 86.5
CSS0021369 Camellia sinensis var. sinensis HOM05D002931 ORTHO05D003273 1.8e-40 171.8 409 37.9
CSS0048152 Camellia sinensis var. sinensis HOM05D002931 ORTHO05D003273 7.1e-37 159.8 371 38.3
CSS0026205 Camellia sinensis var. sinensis HOM05D002931 ORTHO05D003273 2.8e-33 147.9 399 32.8
Dinv36544 Davidia involucrata HOM05D002931 ORTHO05D003273 2.8e-33 147.9 273 40.7
Dinv41530 Davidia involucrata HOM05D002931 ORTHO05D003273 3.1e-32 144.4 268 41.8
TAR636G1764 Trochodendron aralioides HOM05D002931 ORTHO05D003273 8.1e-25 119.8 268 35.8
Cfa003349 Carpinus fangiana HOM05D002931 ORTHO05D003273 1.7e-22 112.1 415 29.2
Rhsim03G0246900 Rhododendron simsii HOM05D000006 ORTHO05D000001 3.8e-22 110.9 94 64.9
Ciclev10007946m.g Citrus clementina HOM05D002931 ORTHO05D003273 2.4e-21 108.2 407 28.7
Haze_25612 Corylus avellana HOM05D002931 ORTHO05D001597 9.3e-21 106.3 416 29.1
Manes.06G049800 Manihot esculenta HOM05D002931 ORTHO05D003273 1.3e-19 102.4 412 27.9
TAR625G1122 Trochodendron aralioides HOM05D002931 ORTHO05D003273 3.9e-19 100.9 268 33.2
Nn8g39392 Nelumbo nucifera HOM05D002931 ORTHO05D003273 9.6e-18 96.3 321 32.7
MBI04_g07629_MAGBIO Magnolia biondii HOM05D002931 ORTHO05D003273 1.3e-17 95.9 273 31.9
QL02p087842 Quercus lobata HOM05D002931 ORTHO05D003273 2.1e-17 95.1 413 26.9
GSVIVG01015505001 Vitis vinifera HOM05D002931 ORTHO05D003273 2.8e-17 94.7 267 33.0
CiPaw.03G242100 Carya illinoinensis HOM05D002931 ORTHO05D003273 4.8e-17 94.0 267 33.3
Rhsim11G0003800 Rhododendron simsii HOM05D001453 ORTHO05D050679 3.1e-16 91.3 59 74.6
Rhsim05G0048600 Rhododendron simsii HOM05D032663 ORTHO05D050679 1.5e-15 89.0 59 72.9
Rhsim05G0048700 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.5e-15 89.0 59 72.9
RhsimUnG0196300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.5e-15 89.0 59 72.9
TWI34G0601 Tripterygium wilfordii HOM05D002931 ORTHO05D003273 6.4e-14 83.6 312 29.5
Duzib150G1215 Durio zibethinus HOM05D002931 ORTHO05D003273 1.1e-13 82.8 265 30.6
Peaxi162Scf00984g00118 Petunia axillaris HOM05D002931 ORTHO05D003273 4.2e-13 80.9 268 30.2
RcHm_v2.0_Chr2g0089101 Rosa chinensis HOM05D002931 ORTHO05D003273 7.1e-13 80.1 262 30.9
Atru.chr7.1207 Acer truncatum HOM05D002931 ORTHO05D003273 9.3e-13 79.7 266 30.5
Rhsim12G0181500 Rhododendron simsii HOM05D032663 ORTHO05D338647 1.8e-11 75.5 44 81.8
Glyma.05G008000 Glycine max HOM05D002931 ORTHO05D003273 1.9e-10 72.0 270 28.5
Glyma.17G116200 Glycine max HOM05D002931 ORTHO05D003273 5.6e-10 70.5 270 28.5
Prupe.7G239900 Prunus persica HOM05D002931 ORTHO05D003273 7.4e-10 70.1 272 30.1
Gorai.013G233700 Gossypium raimondii HOM05D002931 ORTHO05D003273 8.2e-09 66.6 168 31.0
Gohir.D13G204800 Gossypium hirsutum HOM05D002931 ORTHO05D003273 9.0e-08 63.2 168 30.4
Lj4g0003419 Lotus japonicus HOM05D002931 ORTHO05D003273 9.0e-08 63.2 273 27.5
Cc06_g08760 Coffea canephora HOM05D002931 ORTHO05D003273 7.6e-07 60.1 342 25.1
Gohir.A13G199300 Gossypium hirsutum HOM05D002931 ORTHO05D003273 2.2e-06 58.5 154 30.5
Aqoxy7G03732 Aquilegia oxysepala HOM05D002931 ORTHO05D003273 6.5e-06 57.0 283 27.6


User provided reference genes

Program Settings