Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0246400 Rhododendron simsii HOM05D007077 ORTHO05D008853 3.1e-62 241.5 114 100.0
vmacro06174 Vaccinium macrocarpon HOM05D007077 ORTHO05D008853 8.0e-50 200.3 114 81.6
Actinidia07437 Actinidia chinensis HOM05D007077 ORTHO05D008853 1.1e-46 189.9 107 79.4
CSS0046716 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 9.2e-46 186.8 113 74.3
MBI04_g10421_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 1.6e-42 176.0 105 75.2
TAR636G1135 Trochodendron aralioides HOM05D007077 ORTHO05D008853 2.8e-42 175.3 104 72.1
CiPaw.03G240800 Carya illinoinensis HOM05D007077 ORTHO05D008853 1.1e-41 173.3 103 72.8
Prupe.7G238900 Prunus persica HOM05D007077 ORTHO05D008853 2.3e-41 172.2 103 72.8
GSVIVG01035379001 Vitis vinifera HOM05D007077 ORTHO05D008853 2.3e-41 172.2 105 70.5
QL02p087620 Quercus lobata HOM05D007077 ORTHO05D008853 8.9e-41 170.2 103 71.8
Dinv36561 Davidia involucrata HOM05D007077 ORTHO05D008853 1.5e-40 169.5 110 70.0
RcHm_v2.0_Chr2g0089201 Rosa chinensis HOM05D007077 ORTHO05D008853 1.7e-39 166.0 103 68.9
FAN23G2971 Fragaria x ananassa HOM05D007077 ORTHO05D008853 3.7e-39 164.9 103 68.9
FAN26G2340 Fragaria x ananassa HOM05D007077 ORTHO05D008853 3.7e-39 164.9 103 68.9
FvH4_1g03790 Fragaria vesca HOM05D007077 ORTHO05D008853 8.3e-39 163.7 103 68.0
FAN19G1922 Fragaria x ananassa HOM05D007077 ORTHO05D008853 8.3e-39 163.7 103 68.0
CSS0033721 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 1.9e-38 162.5 92 75.0
MD02G1036500 Malus domestica HOM05D007077 ORTHO05D008853 2.4e-38 162.2 102 70.6
Atru.chr7.1226 Acer truncatum HOM05D007077 ORTHO05D008853 5.4e-38 161.0 104 63.5
Duzib168G0686 Durio zibethinus HOM05D007077 ORTHO05D008853 2.7e-37 158.7 103 63.1
Thecc.09G122000 Theobroma cacao HOM05D007077 ORTHO05D008853 4.6e-37 157.9 103 62.1
Gohir.A05G018500 Gossypium hirsutum HOM05D007077 ORTHO05D008853 1.3e-36 156.4 103 65.0
Eucgr.C04175 Eucalyptus grandis HOM05D007077 ORTHO05D008853 2.3e-36 155.6 103 62.1
TWI63G0911 Tripterygium wilfordii HOM05D007077 ORTHO05D008853 2.3e-36 155.6 103 62.1
Duzib150G1251 Durio zibethinus HOM05D007077 ORTHO05D008853 3.0e-36 155.2 103 63.1
Gorai.009G019800 Gossypium raimondii HOM05D007077 ORTHO05D008853 5.1e-36 154.5 103 64.1
Psat4g041880 Pisum sativum HOM05D007077 ORTHO05D008853 6.6e-36 154.1 103 64.1
Actinidia26405 Actinidia chinensis HOM05D007077 ORTHO05D008853 1.1e-35 153.3 84 78.6
COL.COLO4_35188 Corchorus olitorius HOM05D007077 ORTHO05D008853 1.5e-35 152.9 102 61.8
COL.COLO4_05999 Corchorus olitorius HOM05D007077 ORTHO05D008853 1.9e-35 152.5 103 61.2
Gohir.D05G019400 Gossypium hirsutum HOM05D007077 ORTHO05D008853 2.5e-35 152.1 103 63.1
CDE06G0710 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 3.3e-35 151.8 105 65.7
Potri.003G137900 Populus trichocarpa HOM05D007077 ORTHO05D008853 4.3e-35 151.4 103 59.2
Sabra03G0099300 Salix brachista HOM05D007077 ORTHO05D008853 5.6e-35 151.0 104 58.7
A07p29070 Brassica napus HOM05D007077 ORTHO05D008853 1.2e-34 149.8 103 60.2
BolC6t38404H Brassica oleracea HOM05D007077 ORTHO05D008853 2.8e-34 148.7 102 61.8
Lj4g0023379 Lotus japonicus HOM05D007077 ORTHO05D008853 3.6e-34 148.3 101 65.3
Lalb_Chr07g0178761 Lupinus albus HOM05D007077 ORTHO05D008853 3.6e-34 148.3 102 61.8
arahy.Tifrunner.gnm1.ann1.7ZPA8Y Arachis hypogaea HOM05D007077 ORTHO05D008853 4.7e-34 147.9 100 63.0
arahy.Tifrunner.gnm1.ann1.BTXG8Q Arachis hypogaea HOM05D007077 ORTHO05D008853 4.7e-34 147.9 100 63.0
BcaB02g06994 Brassica carinata HOM05D007077 ORTHO05D008853 4.7e-34 147.9 102 60.8
C06p32830 Brassica napus HOM05D007077 ORTHO05D008853 4.7e-34 147.9 102 60.8
Os01g0612800 Oryza sativa ssp. japonica HOM05D007077 ORTHO05D008853 4.7e-34 147.9 110 58.2
Manes.06G053400 Manihot esculenta HOM05D007077 ORTHO05D008853 1.4e-33 146.4 103 60.2
Glyma.05G009400 Glycine max HOM05D007077 ORTHO05D008853 3.1e-33 145.2 101 63.4
Glyma.17G117400 Glycine max HOM05D007077 ORTHO05D008853 3.1e-33 145.2 101 62.4
Phvul.003G162000 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 2.6e-32 142.1 102 59.8
Sed0015086 Sechium edule HOM05D007077 ORTHO05D008853 2.6e-32 142.1 103 58.3
Thhalv10019349m.g Eutrema salsugineum HOM05D007077 ORTHO05D008853 3.4e-32 141.7 101 59.4
VMungo1215G0506 Vigna mungo HOM05D007077 ORTHO05D008853 4.4e-32 141.4 108 58.3
Carub.0002s2191 Capsella rubella HOM05D007077 ORTHO05D008853 5.8e-32 141.0 101 59.4
BcaB05g24885 Brassica carinata HOM05D007077 ORTHO05D008853 9.9e-32 140.2 102 57.8
Phvul.003G161700 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 1.3e-31 139.8 101 60.4
Sp5g30250 Schrenkiella parvula HOM05D007077 ORTHO05D008853 1.3e-31 139.8 102 56.9
Medtr4g113750 Medicago truncatula HOM05D007077 ORTHO05D008853 2.2e-31 139.0 94 62.8
AL2G35020 Arabidopsis lyrata HOM05D007077 ORTHO05D008853 2.9e-31 138.7 102 56.9
AT1G75125 Arabidopsis thaliana HOM05D007077 ORTHO05D008853 3.8e-31 138.3 102 56.9
Cpa.g.sc75.76 Carica papaya HOM05D007077 ORTHO05D008853 4.9e-31 137.9 97 58.8
TPR.G10683 Trifolium pratense HOM05D007077 ORTHO05D008853 8.4e-31 137.1 103 56.3
BcaB02g07008 Brassica carinata HOM05D007077 ORTHO05D008853 1.1e-30 136.7 103 57.3
THA.LOC104826537 Tarenaya hassleriana HOM05D007077 ORTHO05D008853 1.4e-30 136.3 103 57.3
BraA07t30546Z Brassica rapa HOM05D007077 ORTHO05D008853 9.2e-30 133.7 103 55.3
CARHR068440 Cardamine hirsuta HOM05D007077 ORTHO05D008853 9.2e-30 133.7 101 56.4
Aa31LG4G5320 Aethionema arabicum HOM05D007077 ORTHO05D008853 2.7e-29 132.1 103 55.3
Ciclev10010021m.g Citrus clementina HOM05D007077 ORTHO05D008853 2.7e-29 132.1 82 67.1
QL02p031889 Quercus lobata HOM05D007077 ORTHO05D008853 3.5e-29 131.7 100 61.0
QL93p2004_0148 Quercus lobata HOM05D007077 ORTHO05D008853 3.5e-29 131.7 100 61.0
CARHR068450 Cardamine hirsuta HOM05D007077 ORTHO05D008853 4.6e-29 131.3 102 55.9
PGR102G1835 Punica granatum HOM05D007077 ORTHO05D008853 4.6e-29 131.3 103 55.3
Pp3c10_2110 Physcomitrium patens HOM05D007077 ORTHO05D008853 7.8e-29 130.6 100 55.0
Haze_25634 Corylus avellana HOM05D007077 ORTHO05D008853 1.0e-28 130.2 96 60.4
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 1.0e-28 130.2 89 64.0
Hund09149 Selenicereus undatus HOM05D007077 ORTHO05D008853 1.3e-28 129.8 98 60.2
CDE07G1647 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.7e-28 129.4 83 67.5
CsaV3_2G002680 Cucumis sativus L. HOM05D007077 ORTHO05D008853 3.9e-28 128.3 103 53.4
SalBow6G6978 Salvia bowleyana HOM05D007077 ORTHO05D008853 6.6e-28 127.5 103 53.4
Ah.05g167190 Amaranthus hybridus HOM05D007077 ORTHO05D008853 8.6e-28 127.1 103 54.4
Nitab4.5_0000167g0170 Nicotiana tabacum HOM05D007077 ORTHO05D008853 1.1e-27 126.7 102 55.9
Hma1.2p1_0665F.1_g199210 Hydrangea macrophylla HOM05D007077 ORTHO05D008853 4.3e-27 124.8 62 80.6
BcaC03g15541 Brassica carinata HOM05D007077 ORTHO05D008853 7.3e-27 124.0 101 54.5
BolC2t09261H Brassica oleracea HOM05D007077 ORTHO05D008853 7.3e-27 124.0 101 54.5
Mapoly0015s0040 Marchantia polymorpha HOM05D007077 ORTHO05D008853 1.2e-26 123.2 107 52.3
Peaxi162Scf01013g00228 Petunia axillaris HOM05D007077 ORTHO05D008853 1.6e-26 122.9 102 53.9
Oeu055966.1 Olea europaea HOM05D007077 ORTHO05D008853 4.7e-26 121.3 105 55.2
CAN.G307.7 Capsicum annuum HOM05D007077 ORTHO05D008853 1.1e-25 120.2 102 52.0
A02p19700 Brassica napus HOM05D007077 ORTHO05D008853 2.4e-25 119.0 106 49.1
BraA02t07006Z Brassica rapa HOM05D007077 ORTHO05D008853 2.4e-25 119.0 106 49.1
CDE07G0486 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 6.9e-25 117.5 75 64.0
MSTRG.10653 Avicennia marina HOM05D007077 ORTHO05D008853 8.9e-25 117.1 103 50.5
EL10Ac8g18603 Beta vulgaris HOM05D007077 ORTHO05D008853 1.2e-24 116.7 88 58.0
ClCG11G002840 Citrullus lanatus HOM05D007077 ORTHO05D008853 1.2e-24 116.7 122 45.9
SGA_v2.0_scaffold51G18726 Striga asiatica HOM05D007077 ORTHO05D008853 2.0e-24 115.9 101 48.5
Migut.K00414 Erythranthe guttata HOM05D007077 ORTHO05D008853 4.4e-24 114.8 105 48.6
Solyc03g025690.4 Solanum lycopersicum HOM05D007077 ORTHO05D008853 5.8e-24 114.4 105 50.5
AagrBONN_evm.TU.Sc2ySwM_368.923 Anthoceros agrestis HOM05D007077 ORTHO05D008853 1.7e-23 112.8 100 46.0
Sopen03g004510 Solanum pennellii HOM05D007077 ORTHO05D008853 2.9e-23 112.1 102 49.0
SMO137G0334 Selaginella moellendorffii HOM05D007077 ORTHO05D008853 8.4e-23 110.5 94 50.0
Cc09_g03400 Coffea canephora HOM05D007077 ORTHO05D008853 1.9e-22 109.4 85 52.9
Lsat_1_v5_gn_5_98981 Lactuca sativa HOM05D007077 ORTHO05D008853 1.2e-21 106.7 109 48.6
Sed0025696 Sechium edule HOM05D007077 ORTHO05D008853 1.6e-21 106.3 90 50.0
Manes.14G129700 Manihot esculenta HOM05D007077 ORTHO05D008853 3.0e-20 102.1 91 48.4
GSVIVG01015495001 Vitis vinifera HOM05D007077 ORTHO05D008853 3.3e-19 98.6 64 65.6
Nitab4.5_0001579g0110 Nicotiana tabacum HOM05D007077 ORTHO05D008853 1.6e-18 96.3 105 42.9
HanXRQChr01g0017151 Helianthus annuus HOM05D007077 ORTHO05D008853 6.9e-17 90.9 118 43.2
PGSC0003DMG400014298 Solanum tuberosum HOM05D007077 ORTHO05D008853 6.9e-17 90.9 89 44.9
MELO3C031577.2 Cucumis melo HOM05D007077 ORTHO05D008853 5.8e-16 87.8 91 44.0
HanXRQChr12g0356451 Helianthus annuus HOM05D007077 ORTHO05D008853 3.8e-15 85.1 124 40.3
C02p32320 Brassica napus HOM05D007077 ORTHO05D008853 5.4e-14 81.3 59 61.0
CBR_g10839 Chara braunii HOM05D001161 ORTHO05D000497 7.4e-11 70.9 98 34.7
MCO14G029 Micromonas commoda HOM05D007077 ORTHO05D008853 1.1e-09 67.0 100 32.0
QL03p062338 Quercus lobata HOM05D007077 ORTHO05D008853 1.2e-08 63.5 50 60.0
Actinidia26406 Actinidia chinensis HOM05D007077 ORTHO05D008853 7.6e-08 60.8 44 70.5
MBI04_g46496_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 3.8e-07 58.5 43 67.4
Nn8g39378 Nelumbo nucifera HOM05D007077 ORTHO05D008853 1.9e-06 56.2 42 64.3


User provided reference genes

Program Settings