Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 2177.1 1068 100.0
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1822.0 1062 85.4
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1760.0 1093 80.5
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1748.4 1084 80.4
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1731.1 1076 80.7
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1691.0 1082 78.5
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1632.8 1069 76.3
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1629.4 1039 78.2
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1626.3 1045 76.9
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1622.1 1054 76.2
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1613.2 1006 79.2
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1612.8 1054 76.3
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1611.7 1060 74.9
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1607.4 1056 75.3
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1606.7 1056 75.2
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1605.5 1060 74.9
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1605.1 1056 75.9
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1604.7 1071 75.0
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1604.3 1050 74.9
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1604.0 1049 75.3
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1603.2 1059 76.3
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1593.2 1071 73.5
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1592.8 1049 75.6
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1590.9 1049 75.5
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1588.9 1056 75.2
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1588.2 1040 75.7
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1586.6 1064 74.1
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1582.8 1070 74.0
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1582.0 1050 74.9
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1580.1 1058 74.2
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1579.7 1067 74.2
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1576.6 1066 74.3
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1571.2 1038 75.5
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1570.8 1066 74.2
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1570.1 1076 72.9
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1568.1 1056 73.7
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1567.7 1056 73.7
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1565.1 1058 74.0
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1563.9 1063 75.5
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1563.9 1056 73.9
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1561.2 1064 72.7
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1556.6 1042 74.0
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1555.4 1062 73.2
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1555.0 1020 75.2
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1555.0 1058 72.9
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1553.1 1068 73.4
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1553.1 1053 72.9
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1550.4 1019 74.6
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1549.6 1054 72.6
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1548.1 1053 72.4
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1547.7 1070 72.7
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1546.2 1028 74.2
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1545.4 1057 71.8
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1544.3 1029 74.9
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1541.2 1070 72.6
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1539.6 1030 74.0
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1539.2 1017 74.2
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1539.2 1037 73.3
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1535.0 1057 71.1
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1534.6 1062 71.3
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1533.9 1055 71.9
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1532.3 1038 73.1
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1530.8 1045 73.9
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1528.5 1011 73.2
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1528.1 1059 71.8
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1526.5 1031 72.7
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1525.8 1069 71.6
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1525.8 1082 71.4
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1524.6 1057 71.9
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1522.7 1057 72.1
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1520.4 1050 72.0
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1520.4 1045 73.2
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1520.0 1062 70.8
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1519.2 1050 72.0
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1517.7 1045 72.2
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1510.0 1050 71.8
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1508.8 1055 71.8
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1468.0 1057 68.7
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1465.7 1058 69.4
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1464.5 1032 71.5
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1464.5 850 84.0
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 1461.8 1081 69.1
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1439.9 1107 65.8
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1421.8 849 80.1
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1418.3 1031 68.0
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 0.0e+00 1416.0 983 71.2
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1413.7 1074 66.8
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1402.9 962 72.6
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1402.9 1060 65.8
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1395.6 923 74.4
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1379.0 844 78.9
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1327.4 810 78.6
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1314.3 756 83.6
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1295.4 755 81.5
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1282.7 757 81.0
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1277.7 760 80.8
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1277.3 756 82.0
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1272.7 756 81.6
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1269.6 756 81.0
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1227.2 823 73.3
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 0.0e+00 1215.7 957 63.3
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1211.4 1051 61.6
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1211.4 735 80.0
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 0.0e+00 1192.2 1023 58.5
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 0.0e+00 1145.6 875 64.5
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 0.0e+00 1122.1 682 78.2
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 0.0e+00 1077.0 848 62.7
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 3.2e-302 1042.0 1002 55.6
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 2.3e-300 1035.8 614 80.3
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 7.5e-299 1030.8 776 66.6
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 5.0e-287 991.5 861 61.6
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 2.5e-270 936.0 646 68.0
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 9.5e-270 934.1 627 75.4
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 6.6e-255 884.8 819 54.0
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 2.8e-245 852.8 713 57.1
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 3.1e-244 849.4 758 54.5
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 3.8e-242 842.4 553 71.8
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 1.3e-226 790.8 560 64.8
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 7.0e-196 688.7 510 68.0
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 6.5e-186 655.6 498 66.7
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 1.6e-136 491.5 344 74.1
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.1e-132 476.1 334 74.0
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.0e-131 473.0 275 85.8
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.8e-130 471.5 275 85.5
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.0e-130 470.7 275 85.5
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.0e-130 470.7 298 81.2
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 7.6e-126 456.1 269 84.8
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 5.5e-108 396.7 332 63.3
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.1e-107 393.3 233 84.5
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 1.7e-104 385.2 219 85.8
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 1.0e-98 365.9 412 54.4
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 1.0e-82 312.8 245 69.8
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 2.9e-77 294.7 247 64.8
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.9e-76 292.0 628 34.6
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 5.6e-60 237.3 188 64.4
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 1.0e-53 216.5 184 62.0
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 7.5e-49 200.3 223 52.5
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 1.9e-47 195.7 118 81.4
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 1.2e-46 193.0 126 65.9
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 1.7e-45 189.1 143 63.6
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 1.4e-42 179.5 98 85.7
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 2.9e-40 171.8 129 65.1
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 7.8e-38 163.7 168 53.6
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 1.8e-34 152.5 152 51.3
Sopen00g011810 Solanum pennellii HOM05D004541 ORTHO05D006163 3.1e-34 151.8 198 46.5
CAN.G933.10 Capsicum annuum HOM05D004541 ORTHO05D006163 2.6e-33 148.7 135 57.0
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 3.3e-28 131.7 63 96.8
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 4.3e-28 131.3 62 98.4
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 4.3e-28 131.3 63 96.8
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 2.2e-24 119.0 57 96.5
BcaB01g04836 Brassica carinata HOM05D004541 ORTHO05D006163 2.1e-22 112.5 134 47.0
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 2.5e-20 105.5 212 33.5
Pp3s169_40 Physcomitrium patens HOM05D004541 ORTHO05D012764 3.6e-19 101.7 259 32.0
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 9.0e-10 70.5 163 33.7
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-09 67.4 34 79.4
PRCOL_00004858 Prasinoderma coloniale HOM05D017248 ORTHO05D012764 9.9e-09 67.0 327 24.5
Aa31LG3G3180 Aethionema arabicum HOM05D004541 ORTHO05D059029 1.3e-08 66.6 187 35.3
Cfa021882 Carpinus fangiana HOM05D009644 ORTHO05D012764 7.1e-07 60.8 259 27.8
Dinv20390 Davidia involucrata HOM05D000015 ORTHO05D000249 9.3e-07 60.5 243 26.7
FAN26G1013 Fragaria x ananassa HOM05D000015 ORTHO05D000734 1.6e-06 59.7 255 24.7
A10p20060 Brassica napus HOM05D004541 ORTHO05D006163 7.9e-06 57.4 28 89.3


User provided reference genes

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