Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 9.4e-156 553.5 286 100.0
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.7e-125 453.0 267 79.0
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.0e-121 439.5 295 73.9
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 6.2e-115 417.9 267 72.7
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.0e-109 399.1 266 71.8
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 6.2e-107 391.3 267 66.7
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 3.2e-103 379.0 261 66.7
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 5.4e-103 378.3 261 67.0
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.2e-102 377.1 269 67.3
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.1e-100 370.5 258 66.7
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.8e-99 365.9 261 65.9
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.8e-98 361.3 267 62.2
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 8.9e-98 360.9 258 65.1
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 2.6e-97 359.4 287 62.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 4.4e-97 358.6 269 63.2
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 5.8e-97 358.2 261 65.1
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.4e-96 354.4 267 61.8
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.1e-95 354.0 267 62.5
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 3.9e-93 345.5 240 66.7
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 6.6e-93 344.7 266 62.4
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 3.3e-92 342.4 261 61.7
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.2e-91 340.5 266 62.0
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.2e-91 340.5 258 60.9
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 3.6e-91 339.0 267 63.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.8e-90 336.7 267 59.2
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 4.0e-90 335.5 268 59.3
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 8.9e-90 334.3 268 59.0
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.2e-89 334.0 268 60.8
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.2e-89 334.0 264 59.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.5e-89 333.6 262 61.8
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.4e-89 332.4 266 62.4
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 4.4e-89 332.0 268 60.4
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 5.8e-89 331.6 262 61.1
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 5.8e-89 331.6 254 63.8
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.3e-88 330.5 262 60.7
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.9e-88 329.3 264 59.1
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.8e-88 328.9 261 60.5
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 3.8e-88 328.9 267 59.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 3.8e-88 328.9 340 50.3
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 6.4e-88 328.2 265 60.0
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 8.4e-88 327.8 267 59.6
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.4e-87 327.0 268 62.3
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.9e-87 326.6 268 59.3
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 5.4e-87 325.1 270 58.5
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 9.3e-87 324.3 262 58.8
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.3e-85 319.7 268 57.8
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.0e-85 319.3 263 58.9
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 3.9e-85 318.9 280 55.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 5.1e-85 318.5 268 59.0
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 5.1e-85 318.5 254 60.2
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 8.7e-85 317.8 262 58.0
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 3.3e-84 315.8 267 59.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 9.6e-84 314.3 264 59.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.6e-83 313.5 259 58.7
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 2.1e-83 313.2 266 57.5
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 2.1e-83 313.2 235 66.0
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.6e-83 312.4 258 58.5
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.6e-83 312.4 258 58.5
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.8e-83 312.0 267 57.3
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 6.2e-83 311.6 268 57.8
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-82 310.5 256 58.6
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.4e-82 310.5 256 58.6
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.4e-82 310.5 265 57.0
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.4e-82 310.5 261 59.4
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 1.8e-82 310.1 262 58.8
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.8e-82 310.1 265 57.7
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 2.4e-82 309.7 264 57.2
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 3.1e-82 309.3 258 58.5
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 4.0e-82 308.9 259 58.7
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 4.0e-82 308.9 259 58.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 6.9e-82 308.1 256 58.6
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 6.9e-82 308.1 265 57.4
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 6.9e-82 308.1 245 59.2
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 9.0e-82 307.8 259 58.3
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-81 307.4 277 54.5
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.2e-81 307.4 257 58.8
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.5e-81 307.0 256 58.2
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.5e-81 307.0 262 56.9
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.5e-81 307.0 267 56.6
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.4e-81 305.8 257 58.4
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 5.8e-81 305.1 196 72.4
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.6e-81 304.7 260 57.3
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.2e-80 303.1 260 57.3
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 3.8e-80 302.4 258 53.9
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.1e-79 300.8 261 58.2
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.4e-79 300.4 268 53.7
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.4e-79 300.4 268 53.7
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.4e-79 300.4 268 53.7
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.2e-78 297.4 244 61.1
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.6e-78 297.0 253 58.1
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 2.8e-75 286.2 258 53.1
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 8.1e-75 284.6 286 51.4
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.4e-74 283.9 247 57.5
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 4.0e-74 282.3 272 51.8
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.0e-73 280.0 247 55.9
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 3.4e-73 279.3 263 53.2
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 7.6e-73 278.1 267 50.2
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 2.2e-72 276.6 252 55.6
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 9.3e-71 271.2 229 57.2
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 3.5e-70 269.2 258 53.5
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 5.1e-69 265.4 223 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.1e-68 264.2 256 50.4
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 9.0e-66 254.6 213 56.3
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.6e-65 253.1 261 47.1
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.0e-64 251.1 267 46.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 3.8e-64 249.2 293 43.7
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.7e-62 243.0 258 49.6
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 7.9e-62 241.5 328 40.2
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 2.3e-61 240.0 258 47.3
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.9e-60 236.9 263 47.9
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 4.2e-55 219.2 193 56.5
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.7e-52 208.8 211 50.2
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.7e-52 208.8 211 50.2
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 3.4e-49 199.5 274 38.3
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 7.7e-49 198.4 211 48.8
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.0e-48 198.0 211 48.8
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.0e-45 188.0 214 47.2
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.1e-44 184.5 183 47.0
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 3.3e-44 183.0 203 47.8
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 3.3e-44 183.0 241 41.5
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.3e-40 171.0 123 65.9
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.9e-40 169.9 418 28.7
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.1e-39 167.9 154 53.2
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.4e-36 156.0 281 33.1
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.8e-34 150.6 142 52.8
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 5.9e-33 145.6 162 46.9
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.7e-32 144.1 137 55.5
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 6.1e-30 135.6 381 26.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 8.8e-29 131.7 126 56.3
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.0e-28 130.6 305 29.2
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 7.0e-26 122.1 142 47.2
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.6e-25 120.9 55 98.2
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 2.9e-24 116.7 137 43.1
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.2e-23 113.2 74 67.6
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 6.1e-22 109.0 137 38.7
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.0e-20 104.0 138 43.5
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 7.5e-20 102.1 67 71.6
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 9.8e-20 101.7 53 81.1
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.8e-19 99.4 103 50.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-16 91.3 58 63.8
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 5.2e-13 79.3 166 34.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.4e-10 70.5 69 53.6
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 1.5e-07 61.2 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 1.5e-07 61.2 38 68.4
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.9e-07 60.8 38 60.5


User provided reference genes

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