Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.3e-301 1038.1 532 100.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.1e-201 704.5 545 71.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.4e-199 698.7 528 70.1
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.6e-180 636.7 553 63.8
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.3e-171 607.1 535 61.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.8e-151 538.5 532 55.8
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.8e-151 538.5 532 55.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.0e-139 501.1 529 52.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 5.6e-138 495.4 469 57.4
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.1e-133 481.1 538 50.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.5e-133 479.9 528 50.4
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.6e-129 467.2 529 51.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.2e-127 461.1 529 49.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.5e-125 452.2 529 48.4
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.2e-121 440.3 521 49.5
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-120 438.0 527 46.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.3e-120 435.6 524 49.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 9.0e-120 434.9 529 47.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.6e-119 433.3 536 47.0
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 4.5e-119 432.6 526 46.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.7e-119 431.8 527 45.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.7e-118 430.6 442 52.5
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.2e-117 426.4 536 45.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.3e-115 420.2 533 45.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.3e-115 420.2 530 45.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 3.0e-115 419.9 529 45.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.0e-114 417.2 525 45.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 7.4e-114 415.2 535 43.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-113 414.1 535 45.2
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.1e-109 401.4 534 44.8
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.5e-109 400.2 491 45.6
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.1e-108 395.6 498 46.2
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-107 394.8 548 42.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.3e-106 389.8 446 48.0
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 5.7e-106 389.0 493 46.5
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 9.7e-106 388.3 485 46.8
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.2e-103 381.3 524 43.9
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.5e-102 375.6 533 42.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 5.5e-101 372.5 534 43.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 7.2e-101 372.1 533 42.8
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.7e-97 360.9 525 42.3
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.7e-97 360.9 535 43.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 8.2e-97 358.6 469 45.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.1e-96 358.2 480 46.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.4e-96 357.1 468 46.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 3.1e-96 356.7 529 40.5
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.2e-95 354.8 523 41.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.5e-95 353.2 539 40.3
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.3e-94 351.3 525 41.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.5e-93 347.1 539 39.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.2e-93 346.7 486 42.6
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 9.4e-93 345.1 522 40.2
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.1e-92 344.0 487 44.1
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 8.0e-92 342.0 526 42.0
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.3e-91 340.5 545 40.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 3.0e-91 340.1 528 40.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.6e-87 327.8 515 41.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.5e-87 326.2 477 42.6
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.9e-86 323.6 418 46.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.8e-82 308.5 486 40.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.7e-81 307.8 536 36.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.4e-80 304.7 524 38.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 4.1e-80 303.1 540 36.9
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 7.0e-80 302.4 542 35.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-78 298.1 521 37.6
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.9e-78 297.0 499 37.3
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 6.6e-78 295.8 530 35.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 4.3e-77 293.1 484 39.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 5.6e-77 292.7 506 39.1
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.3e-75 287.3 521 37.0
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 8.9e-75 285.4 529 36.5
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.2e-73 280.8 518 34.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.7e-73 280.0 286 52.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.7e-71 273.9 491 36.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.7e-71 273.9 526 35.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-70 271.9 525 35.8
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.0e-70 270.4 486 37.9
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.9e-69 267.7 469 36.0
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 5.6e-69 266.2 531 35.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.2e-67 259.6 542 34.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.9e-67 258.8 256 54.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.5e-66 258.1 507 35.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.0e-66 257.7 503 34.4
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 9.8e-66 255.4 515 36.7
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-65 255.0 503 35.0
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-65 255.0 503 35.0
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.7e-65 254.6 506 35.8
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.9e-65 253.8 520 35.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.9e-65 253.1 506 35.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 3.2e-64 250.4 569 32.7
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 4.1e-64 250.0 361 40.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-63 248.1 489 35.6
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 3.5e-63 246.9 493 34.9
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.6e-63 246.5 377 40.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 7.8e-63 245.7 424 36.1
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-62 245.0 485 35.3
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.3e-62 245.0 379 39.6
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.7e-62 244.6 513 34.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.0e-62 243.8 488 35.2
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.9e-62 243.4 543 33.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.6e-62 242.7 510 32.9
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-61 241.5 346 43.4
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.5e-61 240.7 528 36.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.6e-60 236.9 493 33.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 3.6e-60 236.9 282 46.5
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.6e-60 236.9 530 33.6
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.7e-60 236.5 530 33.6
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 6.2e-60 236.1 272 47.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.2e-60 236.1 543 31.9
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-59 235.3 495 33.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.9e-59 232.3 503 32.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-58 231.9 502 32.1
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.4e-58 229.9 541 32.2
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 4.4e-58 229.9 504 32.9
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 5.8e-58 229.6 507 34.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.7e-57 228.0 514 32.1
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.2e-56 223.8 502 33.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.2e-56 223.8 262 48.9
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 9.2e-56 222.2 413 36.6
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.6e-55 221.5 491 32.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 6.0e-55 219.5 272 47.1
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.0e-54 218.8 272 46.0
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.7e-54 218.0 493 32.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.9e-54 216.9 512 31.2
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.9e-53 214.5 510 31.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.9e-53 214.5 514 33.1
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.2e-52 211.8 548 30.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.7e-52 209.9 495 33.7
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.4e-50 203.4 252 44.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-49 201.4 436 33.0
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.2e-49 201.1 449 31.6
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.4e-48 197.6 554 29.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.7e-47 194.1 531 29.6
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.7e-47 194.1 273 39.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-46 191.4 234 47.0
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.1e-46 189.9 401 33.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 6.6e-46 189.5 305 36.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.6e-44 183.7 388 31.7
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.6e-44 183.7 403 34.7
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 8.1e-44 182.6 390 32.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.0e-43 180.3 412 33.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.2e-43 179.9 270 43.0
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.4e-41 172.6 391 30.9
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.4e-40 171.8 395 32.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 3.2e-40 170.6 275 37.5
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-40 170.2 508 28.9
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 5.4e-40 169.9 248 41.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.7e-39 167.5 464 28.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.3e-38 165.2 395 31.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 2.3e-38 164.5 394 33.8
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.0e-38 164.1 395 33.2
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 3.0e-38 164.1 402 30.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-37 162.2 379 32.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.5e-37 161.8 396 33.3
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 6.4e-33 146.4 254 38.6
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.6e-29 133.3 281 31.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 5.3e-27 126.7 202 39.6
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 9.0e-27 125.9 200 39.5
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.3e-25 122.1 284 31.7
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.3e-25 122.1 254 33.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.7e-25 121.7 202 39.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.2e-25 121.3 487 27.9
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-24 119.0 253 33.6
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.4e-24 118.6 274 31.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.4e-24 117.9 252 33.7
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.6e-23 115.2 254 32.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.5e-21 107.8 130 43.8
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 5.8e-18 96.7 118 39.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.8e-17 94.0 143 38.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-16 92.0 252 30.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.0e-14 84.3 284 28.5
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 1.1e-13 82.4 471 23.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.3e-12 79.0 237 27.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 6.9e-11 73.2 142 35.9
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 4.5e-10 70.5 467 21.8
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 3.6e-07 60.8 117 37.6
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 6.1e-07 60.1 141 29.1


User provided reference genes

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