Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.0e-172 608.6 344 100.0
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.8e-135 485.3 350 76.3
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.3e-127 460.3 369 65.6
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 3.2e-126 455.7 370 67.3
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 7.4e-123 444.5 363 66.4
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 9.6e-123 444.1 374 66.3
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 1.3e-122 443.7 369 64.5
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 6.2e-122 441.4 353 67.7
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.1e-121 440.7 353 67.7
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.1e-121 440.7 362 65.7
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.4e-121 440.3 356 67.4
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.4e-121 440.3 356 67.4
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.4e-121 440.3 370 64.6
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.1e-121 438.7 353 66.6
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 9.0e-121 437.6 357 63.0
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.2e-120 437.2 363 66.1
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.5e-120 436.8 364 65.9
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.0e-120 436.4 358 65.6
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 2.6e-120 436.0 363 65.0
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.4e-120 435.6 357 63.3
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 4.5e-120 435.3 349 67.9
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.5e-120 435.3 357 65.8
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.8e-120 434.9 357 65.8
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.6e-120 434.5 357 65.8
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 7.6e-120 434.5 370 63.5
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.7e-119 433.3 357 67.2
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 2.2e-119 433.0 359 66.0
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.9e-119 432.6 358 66.2
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 3.8e-119 432.2 360 65.8
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 5.0e-119 431.8 362 64.4
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.5e-119 431.4 360 63.6
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 8.4e-119 431.0 357 65.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.4e-119 431.0 341 68.0
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.5e-118 429.5 341 68.0
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.2e-118 429.1 378 63.5
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 3.2e-118 429.1 363 60.6
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 4.2e-118 428.7 344 66.9
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 4.2e-118 428.7 350 67.7
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.5e-118 428.3 363 64.5
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 5.5e-118 428.3 364 60.4
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.6e-117 426.8 341 67.4
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-117 426.8 341 67.4
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.6e-117 426.8 364 64.3
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.5e-117 425.6 351 66.1
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 3.5e-117 425.6 335 68.7
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 7.9e-117 424.5 360 63.9
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-116 424.1 341 67.4
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.3e-116 423.7 356 66.6
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 2.3e-116 422.9 326 69.9
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 3.0e-116 422.5 350 60.9
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 3.0e-116 422.5 336 63.4
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 3.0e-116 422.5 339 65.8
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.1e-116 421.8 347 66.3
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.1e-115 420.6 336 63.1
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.9e-115 419.9 345 66.1
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 2.5e-115 419.5 348 66.7
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 2.5e-115 419.5 348 66.7
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.5e-115 419.5 373 63.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 2.5e-115 419.5 357 60.5
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 3.3e-115 419.1 338 67.5
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.3e-115 419.1 379 61.5
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 4.3e-115 418.7 379 61.2
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.7e-115 418.3 369 61.2
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.7e-115 418.3 363 65.0
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 5.7e-115 418.3 337 67.7
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 9.7e-115 417.5 335 67.8
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 9.7e-115 417.5 352 61.1
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.3e-114 417.2 357 65.5
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.6e-114 416.8 336 62.2
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 2.2e-114 416.4 335 67.5
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 2.2e-114 416.4 352 62.2
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 4.8e-114 415.2 345 66.1
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 4.8e-114 415.2 344 64.8
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.8e-114 415.2 319 71.2
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 4.8e-114 415.2 257 84.0
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 6.3e-114 414.8 363 59.0
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 6.3e-114 414.8 361 59.8
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 6.3e-114 414.8 331 68.3
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 6.3e-114 414.8 363 63.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.1e-113 414.1 361 59.3
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 1.8e-113 413.3 342 61.1
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 2.4e-113 412.9 342 61.1
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 4.1e-113 412.1 344 64.0
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.3e-113 411.8 360 58.9
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 5.3e-113 411.8 360 58.9
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 5.3e-113 411.8 341 63.0
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 2.0e-112 409.8 335 62.1
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.0e-112 409.8 341 64.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.4e-112 409.1 353 62.6
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.4e-112 409.1 353 62.6
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 3.4e-112 409.1 353 62.6
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 4.5e-112 408.7 361 58.4
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 5.9e-112 408.3 346 65.3
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 5.9e-112 408.3 348 65.5
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.3e-111 407.1 361 58.2
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.3e-111 407.1 393 56.0
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.7e-111 406.8 360 62.8
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.8e-111 405.6 352 62.5
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 5.0e-111 405.2 315 65.1
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 6.5e-111 404.8 349 59.0
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.4e-110 403.7 348 64.9
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 1.4e-110 403.7 348 64.9
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 3.2e-110 402.5 353 59.5
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 3.2e-110 402.5 301 66.4
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.6e-109 399.1 381 60.9
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.0e-108 397.5 360 57.2
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.0e-108 396.0 322 64.3
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 3.9e-108 395.6 347 58.8
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.1e-107 394.0 345 58.8
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 2.0e-107 393.3 450 53.1
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.5e-107 392.9 343 58.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 3.3e-107 392.5 345 58.6
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 3.3e-107 392.5 301 65.1
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 9.7e-107 391.0 337 59.6
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 9.7e-107 391.0 345 58.6
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.3e-106 390.6 345 58.6
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.5e-104 383.6 337 57.9
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-104 383.6 323 61.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 7.7e-104 381.3 336 58.9
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.0e-103 380.9 313 60.7
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 2.2e-103 379.8 339 61.7
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 2.9e-103 379.4 299 62.5
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 6.5e-103 378.3 357 57.1
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 8.5e-103 377.9 354 55.9
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 1.1e-102 377.5 313 60.4
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.1e-102 377.5 336 57.4
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.5e-102 376.3 248 79.4
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 3.2e-102 375.9 211 82.5
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 9.4e-102 374.4 324 57.1
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.6e-101 372.5 238 76.5
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 7.4e-99 364.8 371 54.4
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.7e-98 362.5 261 75.5
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 4.8e-98 362.1 299 61.5
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.0e-96 356.7 354 57.6
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.5e-94 349.7 349 51.0
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 5.2e-92 342.0 298 55.7
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 3.7e-90 335.9 263 59.7
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.4e-89 334.0 294 58.5
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.5e-88 329.3 298 54.4
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.9e-88 328.6 313 56.2
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.8e-87 325.9 273 60.1
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 8.5e-87 324.7 356 48.3
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 3.2e-86 322.8 315 53.7
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 4.2e-86 322.4 333 48.6
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.8e-84 317.0 323 49.5
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.3e-84 316.6 211 68.2
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 4.8e-82 308.9 380 48.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.4e-81 307.4 366 52.7
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 1.4e-73 280.8 406 42.4
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 9.8e-67 258.1 223 59.2
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.4e-65 254.2 226 57.5
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 2.8e-61 240.0 143 78.3
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 9.2e-57 224.9 170 74.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.9e-49 200.7 246 47.6
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 7.1e-41 172.2 267 44.2
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 7.6e-27 125.6 201 42.8
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 7.1e-25 119.0 183 38.3
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 3.3e-22 110.2 65 78.5
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.3e-21 108.2 188 36.2
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.4e-19 100.1 254 31.1
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 1.1e-17 95.1 245 30.6
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 6.0e-16 89.4 70 85.7
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 3.0e-15 87.0 76 77.6
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.4e-12 78.2 44 84.1
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 5.3e-12 76.3 67 55.2
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 2.9e-10 70.5 120 37.5
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 2.5e-09 67.4 39 76.9
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.2e-08 65.1 108 34.3
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 1.6e-08 64.7 35 82.9
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 3.5e-08 63.5 39 76.9
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.5e-06 57.4 63 42.9
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 3.3e-06 57.0 58 77.6
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 5.7e-06 56.2 67 46.3
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 5.7e-06 56.2 67 46.3


User provided reference genes

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