Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 2085.1 1093 100.0
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 2048.9 1113 96.8
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1958.7 1093 95.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1852.8 1095 87.3
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1697.6 1096 82.4
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1648.6 1096 80.6
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1631.3 1087 80.1
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1620.5 1097 76.5
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1616.7 1084 78.0
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1610.1 1094 77.2
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1584.3 1098 75.5
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1579.7 1094 76.1
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1566.6 1088 75.6
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1094 76.0
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1563.9 1085 77.1
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1563.9 1097 76.0
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1562.0 1097 73.4
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1559.7 1090 75.4
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1558.9 1058 75.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1556.2 1093 76.1
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1551.6 1104 75.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1548.5 1094 75.0
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1548.1 1094 72.8
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1540.4 1101 75.2
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1536.9 1078 73.9
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1536.9 1096 75.5
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1535.8 1087 73.8
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1530.4 1094 74.3
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1530.0 1092 74.8
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1529.6 1094 72.0
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1529.6 1094 72.0
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1526.9 1095 74.5
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1523.8 1075 74.8
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1523.5 1094 73.5
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1521.1 1078 73.4
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1516.1 1094 73.4
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1515.7 1080 72.5
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1513.8 1095 73.7
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1511.9 1093 73.3
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1510.0 1093 73.7
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1507.7 1096 71.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1505.3 978 78.1
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1504.6 1095 73.3
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1503.8 1120 72.2
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1503.0 1134 70.9
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1500.7 1078 74.5
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1499.2 1109 71.0
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1496.9 896 85.5
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1495.7 1095 72.3
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1493.0 1056 73.2
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1489.2 1066 74.7
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1481.5 1096 72.2
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1481.1 1086 72.1
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1479.9 1096 71.9
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1472.2 1103 71.2
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1471.8 1197 67.2
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1471.4 1095 70.1
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1461.4 1145 71.0
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1460.7 1120 70.9
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1458.4 869 81.9
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1458.0 868 82.5
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1456.4 869 81.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1455.7 869 81.6
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1453.0 1118 70.3
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1453.0 1089 71.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1449.5 1134 70.3
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1448.3 1107 72.1
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1434.5 1079 71.6
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1431.4 1087 70.9
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 1088 68.8
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 1047 72.5
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1429.5 1056 71.0
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 1007 72.8
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1413.3 1084 69.1
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 1098 67.3
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1398.6 1059 70.7
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1397.9 1089 67.5
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1396.3 1074 68.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1394.0 953 73.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1382.1 1098 69.9
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 954 72.0
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1378.2 955 71.5
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1363.6 1198 62.0
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1362.4 954 71.3
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1362.4 954 71.3
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1361.7 987 70.9
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1361.7 1091 67.0
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1361.3 954 71.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1360.5 1086 66.3
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1351.3 1250 60.5
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1348.2 1096 68.7
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1347.4 1096 64.7
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1345.9 1141 67.1
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1335.1 1057 66.0
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1325.5 1112 63.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1317.8 1051 64.1
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1286.9 884 72.1
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1203.3 1078 60.3
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1198.7 880 66.8
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 955 63.6
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1135.9 692 81.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1135.6 690 81.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1104.7 1093 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1100.1 1090 56.0
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.1e-288 996.1 687 74.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 2.1e-272 943.0 744 61.8
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.6e-270 936.0 546 83.5
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 6.3e-269 931.4 1085 50.9
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.0e-243 846.7 631 68.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.9e-193 680.6 570 60.2
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.0e-177 627.5 519 69.0
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.7e-160 571.2 448 65.0
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 5.9e-150 536.2 318 83.0
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.0e-125 455.7 450 56.9
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 1.7e-125 454.9 400 67.2
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 5.2e-122 443.4 368 59.0
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 2.8e-115 421.0 402 61.7
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.1e-94 351.7 235 71.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.6e-91 342.0 230 70.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 6.2e-91 340.1 322 58.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.9e-90 336.7 278 61.2
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.6e-83 315.5 1144 28.1
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 5.7e-76 290.4 1022 26.3
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 8.2e-75 286.6 197 73.1
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 8.5e-64 250.0 134 86.6
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 1.0e-61 243.0 187 64.2
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.4e-60 237.7 383 37.9
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.7e-56 225.7 314 51.9
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.0e-54 216.9 144 72.2
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.0e-45 188.3 99 90.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.8e-43 181.0 251 45.8
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-42 179.9 107 83.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 5.3e-42 177.6 208 48.6
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.5e-41 174.5 108 77.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 6.5e-40 170.6 103 75.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.1e-39 169.9 237 45.1
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.2e-39 167.9 149 61.1
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 9.4e-39 166.8 224 42.9
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 6.1e-38 164.1 484 29.3
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.0e-34 150.6 121 61.2
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-32 145.6 119 58.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.0e-29 135.2 209 42.1
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.9e-29 133.7 93 73.1
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-28 132.9 88 72.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-28 132.5 209 41.6
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.4e-26 125.6 111 62.2
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.4e-26 125.6 111 62.2
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.4e-26 125.6 111 62.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-25 122.5 145 49.0
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-22 112.5 72 76.4
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.8e-22 112.1 79 68.4
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 5.2e-21 107.8 97 67.0
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.9e-21 107.1 63 81.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.5e-20 104.0 231 36.4
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.2e-19 102.4 67 74.6
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-17 96.3 79 58.2
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.0e-17 95.9 61 68.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-17 95.1 59 76.3
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.8e-17 94.0 147 40.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 8.6e-16 90.5 51 84.3
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.1e-15 90.1 47 97.9
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 2.8e-14 85.5 117 53.8
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.9e-13 80.5 62 62.9
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.2e-12 80.1 53 79.2
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.4e-12 78.6 190 37.4
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.4e-12 78.2 106 44.3
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.4e-10 73.2 101 45.5
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 4.6e-09 68.2 241 23.2
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.0e-08 67.0 66 51.5
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 1.0e-08 67.0 63 49.2
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.1e-07 63.5 75 45.3
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 2.1e-06 59.3 231 19.9
Actinidia38473 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.8e-06 58.9 177 33.3
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 2.8e-06 58.9 75 42.7
SEGI_17061 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.2e-06 57.8 44 56.8


User provided reference genes

Program Settings