Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1796.2 872 100.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1654.0 870 92.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1492.6 866 82.6
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1491.1 866 82.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1396.3 880 77.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1378.6 870 76.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1372.8 866 75.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1367.8 868 76.0
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1366.7 871 77.2
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1352.4 867 74.5
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1349.3 867 74.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1343.9 866 74.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1342.4 867 74.2
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1340.9 867 74.2
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1338.9 871 73.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1338.6 866 73.1
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1332.4 866 72.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1330.9 865 73.2
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1330.5 871 72.3
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1318.9 869 71.8
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1312.7 868 71.7
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1310.4 866 71.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1307.7 873 71.2
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 866 71.6
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 872 71.8
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 866 70.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 865 70.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1299.3 866 71.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 868 72.2
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1297.3 866 71.6
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1295.8 884 70.5
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 873 71.2
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 866 71.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 866 71.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1294.6 873 71.0
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1293.1 872 71.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1288.9 870 71.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 870 70.9
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 866 70.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 871 71.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1282.7 884 70.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1282.7 871 70.0
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1282.7 866 71.0
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1281.2 867 71.0
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 870 70.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 871 70.5
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 877 70.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 871 70.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 864 70.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 867 71.2
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 874 69.0
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 867 70.1
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1271.9 866 70.2
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 866 70.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1269.2 874 68.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 870 69.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 874 70.1
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 867 70.4
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1263.4 875 69.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1263.1 866 69.7
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 869 68.8
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 866 69.4
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 866 69.5
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 866 70.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 866 69.5
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1255.0 866 69.3
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 866 69.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 866 69.4
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 868 69.4
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 869 68.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 885 68.1
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 888 67.7
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 877 68.3
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1237.6 866 68.6
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 827 70.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1234.2 867 67.9
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 865 68.9
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 869 68.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 867 67.9
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 869 68.0
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 866 67.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 858 68.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1219.9 869 67.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 869 67.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 869 67.1
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 865 67.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 867 67.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1213.7 867 67.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1173.3 867 65.3
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1147.9 857 65.2
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1132.1 749 73.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1092.8 867 60.8
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 6.0e-312 1073.5 861 61.3
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 7.7e-310 1067.0 867 62.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.7e-309 1065.8 647 76.8
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 3.8e-309 1064.7 691 71.9
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 2.7e-299 1031.9 692 70.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 6.1e-291 1004.2 866 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.6e-286 989.6 870 55.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 4.6e-278 961.4 872 54.1
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.0e-277 958.7 872 53.1
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.0e-205 721.1 766 47.7
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-184 651.0 388 81.7
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 6.3e-171 605.5 478 63.6
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.9e-146 524.2 460 56.1
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-119 435.3 363 58.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.1e-103 382.1 307 61.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 4.0e-72 277.3 204 65.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.2e-67 261.5 168 73.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.4e-55 221.1 161 68.3
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 9.2e-53 213.0 175 58.3
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.4e-45 188.3 195 52.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.2e-38 165.2 118 70.3
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.4e-38 163.7 216 44.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.6e-35 153.3 85 85.9
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.6e-33 149.1 149 46.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 2.8e-25 121.7 86 70.9
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 3.1e-24 118.2 90 64.4
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-21 109.8 69 75.4
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 6.0e-20 104.0 73 61.6
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-15 89.0 106 43.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.1e-13 80.5 295 23.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.3e-13 80.1 329 24.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 7.8e-12 77.0 337 23.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.3e-11 76.3 324 24.4
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.9e-11 74.7 95 41.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 3.3e-10 71.6 308 24.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.3e-10 70.5 33 90.9
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.3e-09 69.7 84 44.0
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.3e-09 69.7 311 24.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.6e-09 69.3 239 24.3
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.1e-08 66.6 319 24.1
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.3e-08 64.3 186 29.0
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.2e-07 63.2 174 28.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-07 63.2 294 26.5
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 5.8e-07 60.8 64 45.3
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 9.9e-07 60.1 303 25.1
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.3e-06 59.7 217 24.9
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.3e-06 59.7 221 23.1
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.9e-06 58.5 302 25.5
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.4e-06 57.4 176 28.4


User provided reference genes

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