Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-147 525.8 273 100.0
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.7e-29 134.0 210 50.5
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.9e-26 122.9 171 53.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.2e-21 107.1 108 56.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 8.4e-21 105.1 223 41.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.6e-19 100.9 137 51.1
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.6e-19 100.9 67 80.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.1e-19 100.5 65 80.0
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.1e-19 100.5 167 49.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 6.0e-19 99.0 66 77.3
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.3e-18 97.1 60 81.7
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 3.0e-18 96.7 69 71.0
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 3.0e-18 96.7 70 72.9
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.0e-18 96.7 72 72.2
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 6.7e-18 95.5 67 77.6
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 8.7e-18 95.1 67 76.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.5e-17 94.4 67 74.6
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-17 94.4 69 76.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-17 94.4 69 76.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-17 94.4 69 76.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.9e-17 94.0 65 75.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.9e-17 94.0 178 44.9
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.9e-17 94.0 62 77.4
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.5e-17 93.6 63 79.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.3e-17 93.2 58 82.8
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 4.3e-17 92.8 124 52.4
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.3e-17 92.8 61 75.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 4.3e-17 92.8 61 75.4
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 5.7e-17 92.4 61 78.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.4e-17 92.0 60 80.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 9.6e-17 91.7 63 74.6
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 9.6e-17 91.7 67 74.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-16 91.3 67 73.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-16 91.3 67 76.1
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.3e-16 91.3 60 80.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.3e-16 91.3 67 71.6
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.3e-16 91.3 60 75.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.3e-16 91.3 82 64.6
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.3e-16 91.3 60 80.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.6e-16 90.9 65 75.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.6e-16 90.9 67 70.1
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.1e-16 90.5 67 71.6
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.1e-16 90.5 182 40.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.8e-16 90.1 60 78.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.7e-16 89.7 64 70.3
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.8e-16 89.4 63 69.8
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.8e-16 89.4 64 73.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 8.2e-16 88.6 60 73.3
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.1e-15 88.2 63 73.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-15 88.2 60 75.0
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.4e-15 87.8 207 39.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.4e-15 87.8 69 69.6
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.4e-15 87.8 67 73.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-15 87.4 67 71.6
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.8e-15 87.4 60 75.0
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.4e-15 87.0 65 72.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.1e-15 86.7 99 53.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 4.1e-15 86.3 55 78.2
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 4.1e-15 86.3 68 70.6
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.3e-15 85.9 165 42.4
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.3e-15 85.9 60 71.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.3e-15 85.9 60 71.7
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.9e-15 85.5 60 75.0
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 9.0e-15 85.1 125 50.4
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 9.0e-15 85.1 78 61.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 9.0e-15 85.1 68 69.1
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.0e-15 85.1 68 69.1
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.0e-15 85.1 68 69.1
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.0e-15 85.1 68 69.1
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.0e-15 85.1 67 70.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 9.0e-15 85.1 67 67.2
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-14 84.3 64 71.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-14 84.3 63 74.6
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.0e-14 84.0 60 73.3
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.0e-14 84.0 60 75.0
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.0e-14 84.0 65 70.8
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.0e-14 84.0 126 46.0
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.0e-14 84.0 77 55.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.4e-14 83.2 60 71.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-14 82.8 59 72.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 4.5e-14 82.8 59 72.9
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.5e-14 82.8 64 71.9
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 4.5e-14 82.8 49 79.6
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 5.8e-14 82.4 72 61.1
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.8e-14 82.4 72 61.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.8e-14 82.4 68 60.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-14 82.0 70 61.4
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 7.6e-14 82.0 55 74.5
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 7.6e-14 82.0 68 69.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.0e-13 81.6 45 88.9
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.0e-13 81.6 63 69.8
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.3e-13 81.3 127 46.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.3e-13 81.3 66 68.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.7e-13 80.9 106 49.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.2e-13 80.5 60 70.0
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.2e-13 80.5 59 69.5
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.9e-13 80.1 60 70.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.0e-13 79.3 63 63.5
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.0e-13 79.3 63 63.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 6.5e-13 79.0 55 70.9
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 6.5e-13 79.0 55 70.9
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 6.5e-13 79.0 65 66.2
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-12 78.2 64 65.6
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.9e-12 77.4 73 60.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.2e-12 76.6 49 73.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 3.2e-12 76.6 70 62.9
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 5.5e-12 75.9 49 73.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.5e-12 75.9 60 68.3
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.1e-12 75.5 49 71.4
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 9.3e-12 75.1 57 70.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-11 74.7 43 81.4
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.2e-11 74.7 60 66.7
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.2e-11 74.7 130 45.4
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.2e-11 74.7 70 61.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.2e-11 74.7 60 66.7
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.6e-11 74.3 83 53.0
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-11 73.6 166 39.8
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.6e-11 72.8 49 77.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 7.9e-11 72.0 176 40.3
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.3e-10 71.2 47 78.7
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 8.7e-10 68.6 48 70.8
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-09 68.2 237 34.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.9e-09 67.4 97 48.5
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 5.7e-09 65.9 47 74.5
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 7.4e-09 65.5 48 70.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 9.7e-09 65.1 70 55.7
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-08 64.7 44 75.0
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.6e-08 64.3 72 55.6
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.6e-08 64.3 42 78.6
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.2e-08 63.9 42 71.4
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 2.2e-08 63.9 70 50.0
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 2.8e-08 63.5 51 58.8
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.7e-08 63.2 70 47.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 3.7e-08 63.2 63 55.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.8e-08 62.8 69 52.2
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.8e-08 62.8 57 59.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.3e-08 62.4 82 45.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 8.2e-08 62.0 70 50.0
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.1e-07 61.6 176 37.5
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.8e-07 60.8 71 49.3
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-07 60.5 50 68.0
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.1e-07 60.1 76 47.4
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.3e-07 59.3 70 48.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 6.9e-07 58.9 55 56.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.5e-06 57.8 58 53.4
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.5e-06 57.8 77 44.2
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.6e-06 57.0 76 48.7
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.6e-06 57.0 64 54.7
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 4.5e-06 56.2 60 51.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 4.5e-06 56.2 57 52.6
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 5.9e-06 55.8 37 78.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 7.7e-06 55.5 65 44.6


User provided reference genes

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