Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 3.6e-58 228.0 113 100.0
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 3.8e-28 128.3 109 67.0
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 2.0e-21 105.9 109 58.7
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.3e-20 103.2 109 59.6
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.0e-12 75.5 112 45.5
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.1e-11 73.6 82 52.4
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 9.5e-11 70.5 109 45.0
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 9.5e-11 70.5 96 43.8
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.6e-10 69.7 112 46.4
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 8.1e-10 67.4 111 44.1
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-09 67.0 112 44.6
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.1e-09 67.0 108 45.4
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.1e-09 67.0 109 44.0
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.1e-09 67.0 112 42.9
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.4e-09 66.6 109 43.1
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.8e-09 66.2 99 41.4
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.3e-09 65.9 101 45.5
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 5.2e-09 64.7 109 42.2
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.0e-08 62.8 116 44.8
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.6e-08 62.4 112 45.5
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 7.5e-08 60.8 108 44.4
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.7e-07 59.7 82 48.8
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.2e-07 59.3 82 45.1
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.2e-07 59.3 112 42.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.2e-07 59.3 112 42.0
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 2.9e-07 58.9 83 48.2
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 6.4e-07 57.8 83 45.8
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 8.3e-07 57.4 80 45.0
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 8.3e-07 57.4 110 40.9
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 2.4e-06 55.8 109 38.5
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.4e-06 54.7 107 40.2
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 9.2e-06 53.9 82 43.9


User provided reference genes

Program Settings