Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 0.0e+00 1671.0 839 100.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 0.0e+00 1231.1 1114 62.2
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.3e-301 1039.6 1118 53.7
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.5e-249 866.7 1118 46.5
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.1e-247 860.5 1124 47.2
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.0e-246 856.3 912 53.6
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.6e-246 855.9 920 53.0
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.6e-243 846.7 883 54.0
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 4.6e-243 845.1 930 52.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 2.3e-242 842.8 875 54.5
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.1e-239 833.9 881 51.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 6.4e-237 824.7 926 50.3
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 6.2e-232 808.1 914 51.5
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 4.4e-230 802.0 870 52.5
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 7.6e-230 801.2 935 49.8
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 9.9e-230 800.8 830 54.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 4.9e-229 798.5 870 52.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 8.4e-229 797.7 905 49.7
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 4.2e-228 795.4 919 49.5
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.6e-227 793.5 935 49.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 6.0e-227 791.6 890 51.9
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.0e-226 790.8 910 50.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.9e-226 788.9 905 49.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 8.7e-226 787.7 902 50.8
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 9.6e-225 784.3 791 56.0
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.7e-221 773.5 899 50.1
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 7.1e-220 768.1 906 50.1
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.6e-219 766.9 906 50.1
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.6e-219 765.4 906 49.9
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.3e-218 763.1 1111 42.7
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 3.9e-218 762.3 903 50.2
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 2.1e-211 740.0 908 47.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.8e-210 736.9 897 48.4
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 2.3e-210 736.5 900 47.3
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.3e-209 732.6 873 47.5
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.3e-208 730.7 864 47.9
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.3e-208 730.7 874 47.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 3.1e-207 726.1 876 47.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.2e-206 724.2 877 47.3
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 2.9e-205 719.5 875 46.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 8.4e-205 718.0 929 45.3
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 3.2e-204 716.1 881 48.8
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 5.5e-204 715.3 870 47.4
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 5.5e-204 715.3 1066 43.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.1e-202 708.8 874 46.6
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.9e-201 706.8 857 47.3
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 7.4e-201 704.9 878 46.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 9.7e-201 704.5 805 50.2
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 2.8e-200 703.0 884 46.8
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 8.2e-200 701.4 869 48.6
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-199 701.0 887 46.7
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-199 700.3 874 46.5
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 4.1e-199 699.1 872 48.3
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 5.0e-197 692.2 1110 39.5
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.0e-197 692.2 891 46.2
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 8.5e-197 691.4 860 46.5
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-196 691.0 869 46.6
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.5e-196 689.9 885 46.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.2e-196 689.5 869 47.9
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 3.3e-193 679.5 938 42.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.2e-188 662.9 870 46.6
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 5.5e-188 662.1 915 43.6
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 2.7e-187 659.8 917 43.5
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 4.7e-187 659.1 910 44.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.0e-186 657.9 910 43.8
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.1e-185 654.4 780 47.7
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.6e-185 653.3 910 42.9
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 6.3e-184 648.7 915 42.7
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 8.2e-184 648.3 918 42.5
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.2e-182 644.4 910 43.1
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 2.0e-182 643.7 910 42.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-181 641.3 787 46.5
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 3.8e-181 639.4 928 42.1
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.4e-180 637.5 768 46.7
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.1e-179 632.1 650 53.4
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.3e-177 626.3 839 45.8
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 9.7e-177 624.8 898 41.0
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-176 624.4 859 44.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.3e-176 622.1 747 47.1
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 4.1e-175 619.4 1071 38.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 8.5e-173 611.7 873 43.4
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.7e-171 605.9 490 65.5
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 2.5e-164 583.6 1097 36.9
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 4.2e-164 582.8 640 51.7
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.8e-159 567.4 1096 36.0
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.3e-157 560.5 920 39.9
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 2.5e-156 557.0 911 39.8
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.3e-154 550.4 765 44.4
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.4e-151 541.2 977 36.3
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 3.5e-142 510.0 851 38.5
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.7e-141 507.7 721 43.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.9e-140 504.2 1037 35.5
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.5e-137 494.6 995 35.3
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.7e-126 457.2 709 41.2
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.7e-115 419.9 571 42.7
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 7.6e-113 412.5 643 40.7
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.8e-112 410.2 513 45.8
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 9.3e-111 405.6 948 31.5
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.0e-105 387.9 750 35.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 3.8e-104 383.6 558 41.6
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 6.4e-104 382.9 508 47.0
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.5e-97 361.7 963 32.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.5e-97 361.7 584 38.9
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.4e-97 360.5 382 52.9
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.9e-95 354.8 532 41.7
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 6.0e-94 349.7 947 30.1
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.7e-93 345.9 247 73.7
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 7.4e-84 316.2 366 45.4
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.4e-82 311.2 742 33.0
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 6.5e-80 303.1 693 30.9
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.1e-74 285.8 365 44.4
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.2e-71 274.2 479 38.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 8.8e-69 266.2 685 32.4
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 4.4e-60 237.3 295 47.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 7.4e-60 236.5 362 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 9.7e-60 236.1 914 26.9
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-58 231.9 598 30.9
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.6e-57 228.0 177 72.9
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 7.2e-55 219.9 336 44.6
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 4.5e-49 200.7 267 43.4
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.5e-47 195.7 167 64.7
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.0e-45 188.0 167 61.1
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 1.3e-43 182.6 385 32.7
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 6.6e-40 170.2 178 55.1
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.2e-38 166.0 177 55.9
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 9.8e-36 156.4 165 53.3
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.2e-25 122.9 97 58.8
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 1.9e-23 115.5 189 34.9
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 7.3e-23 113.6 93 63.4
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 9.5e-23 113.2 109 55.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 5.8e-20 104.0 149 38.9
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.2e-19 102.1 119 52.1
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.4e-18 99.4 133 43.6
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.0e-16 93.2 144 41.7
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 3.9e-08 64.7 39 82.1
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 4.7e-06 57.8 110 34.5


User provided reference genes

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