Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0210900 Rhododendron simsii HOM05D008056 ORTHO05D009804 1.3e-48 196.1 100 100.0
vmacro06398 Vaccinium macrocarpon HOM05D008056 ORTHO05D009804 1.9e-23 112.5 76 76.3
Actinidia34234 Actinidia chinensis HOM05D008056 ORTHO05D009804 3.3e-23 111.7 83 73.5
Actinidia08668 Actinidia chinensis HOM05D008056 ORTHO05D009804 1.3e-19 99.8 81 67.9
Dinv35348 Davidia involucrata HOM05D008056 ORTHO05D009804 2.5e-15 85.5 82 56.1
TAR629G0325 Trochodendron aralioides HOM05D008056 ORTHO05D009804 4.3e-15 84.7 83 60.2
Hma1.2p1_0591F.1_g185220 Hydrangea macrophylla HOM05D008056 ORTHO05D009804 9.6e-15 83.6 82 57.3
Rhsim09G0206700 Rhododendron simsii HOM05D008056 ORTHO05D009804 1.6e-14 82.8 82 59.8
Haze_00233 Corylus avellana HOM05D008056 ORTHO05D009804 4.8e-14 81.3 78 56.4
GSVIVG01038573001 Vitis vinifera HOM05D008056 ORTHO05D009804 1.1e-13 80.1 75 58.7
Cc02_g01320 Coffea canephora HOM05D008056 ORTHO05D009804 3.1e-13 78.6 80 55.0
Dinv29260 Davidia involucrata HOM05D008056 ORTHO05D009804 5.3e-13 77.8 83 56.6
Glyma.04G233800 Glycine max HOM05D008056 ORTHO05D009804 1.3e-11 73.2 78 56.4
CiPaw.06G044900 Carya illinoinensis HOM05D008056 ORTHO05D009804 1.7e-11 72.8 82 56.1
Hma1.2p1_2994F.1_g331390 Hydrangea macrophylla HOM05D008056 ORTHO05D009804 1.7e-11 72.8 77 55.8
Migut.F00196 Erythranthe guttata HOM05D008056 ORTHO05D009804 4.9e-11 71.2 75 49.3
Oeu060999.1 Olea europaea HOM05D008056 ORTHO05D009804 4.9e-11 71.2 80 47.5
Ciclev10023143m.g Citrus clementina HOM05D008056 ORTHO05D009804 6.5e-11 70.9 79 54.4
DCAR_008952 Daucus carota HOM05D008056 ORTHO05D009804 6.5e-11 70.9 86 55.8
Oeu041070.2 Olea europaea HOM05D008056 ORTHO05D009804 8.4e-11 70.5 101 42.6
Sopen06g018070 Solanum pennellii HOM05D008056 ORTHO05D009804 7.1e-10 67.4 77 53.2
TWI39G0847 Tripterygium wilfordii HOM05D008056 ORTHO05D009804 9.3e-10 67.0 82 45.1
HanXRQChr15g0485651 Helianthus annuus HOM05D008056 ORTHO05D009804 1.6e-09 66.2 81 46.9
Potri.012G017400 Populus trichocarpa HOM05D008056 ORTHO05D009804 1.6e-09 66.2 79 45.6
Glyma.06G131000 Glycine max HOM05D008056 ORTHO05D009804 2.1e-09 65.9 78 52.6
Lsat_1_v5_gn_9_49881 Lactuca sativa HOM05D008056 ORTHO05D009804 2.1e-09 65.9 81 44.4
Cpa.g.sc3.104 Carica papaya HOM05D008056 ORTHO05D009804 2.7e-09 65.5 80 50.0
Nitab4.5_0000548g0010 Nicotiana tabacum HOM05D008056 ORTHO05D009804 3.5e-09 65.1 68 44.1
CAN.G312.7 Capsicum annuum HOM05D008056 ORTHO05D009804 4.6e-09 64.7 76 51.3
DCAR_010591 Daucus carota HOM05D008056 ORTHO05D009804 4.6e-09 64.7 57 54.4
Solyc06g052020.2 Solanum lycopersicum HOM05D008056 ORTHO05D009804 7.9e-09 63.9 77 50.6
PGSC0003DMG400019598 Solanum tuberosum HOM05D008056 ORTHO05D009804 7.9e-09 63.9 77 50.6
Ciclev10023135m.g Citrus clementina HOM05D008056 ORTHO05D009804 1.0e-08 63.5 79 48.1
Peaxi162Scf00740g00228 Petunia axillaris HOM05D008056 ORTHO05D009804 1.3e-08 63.2 65 49.2
ECA232G3962 Erigeron canadensis HOM05D008056 ORTHO05D009804 1.8e-08 62.8 83 47.0
Lalb_Chr23g0271651 Lupinus albus HOM05D008056 ORTHO05D009804 1.8e-08 62.8 90 48.9
Prupe.2G313800 Prunus persica HOM05D015219 ORTHO05D009804 2.3e-08 62.4 84 53.6
QL09p007938 Quercus lobata HOM05D008056 ORTHO05D009804 2.3e-08 62.4 74 48.6
GSVIVG01029691001 Vitis vinifera HOM05D008056 ORTHO05D009804 2.3e-08 62.4 76 55.3
arahy.Tifrunner.gnm1.ann1.I0C4BN Arachis hypogaea HOM05D008056 ORTHO05D009804 3.0e-08 62.0 77 48.1
CSS0012223 Camellia sinensis var. sinensis HOM05D008056 ORTHO05D009804 3.0e-08 62.0 59 55.9
Atru.chr12.2248 Acer truncatum HOM05D008056 ORTHO05D009804 3.9e-08 61.6 84 45.2
Nitab4.5_0005491g0040 Nicotiana tabacum HOM05D008056 ORTHO05D009804 6.7e-08 60.8 85 40.0
Medtr3g491850 Medicago truncatula HOM05D008056 ORTHO05D009804 8.7e-08 60.5 80 50.0
TPR.G33657 Trifolium pratense HOM05D008056 ORTHO05D009804 8.7e-08 60.5 79 48.1
arahy.Tifrunner.gnm1.ann1.7U68N5 Arachis hypogaea HOM05D008056 ORTHO05D009804 1.5e-07 59.7 77 46.8
Phvul.009G050700 Phaseolus vulgaris HOM05D008056 ORTHO05D009804 1.9e-07 59.3 79 45.6
Sabra12G0015100 Salix brachista HOM05D008056 ORTHO05D009804 2.5e-07 58.9 80 48.8
CiPaw.05G198700 Carya illinoinensis HOM05D008056 ORTHO05D009804 4.3e-07 58.2 86 46.5
Duzib205G0818 Durio zibethinus HOM05D015444 ORTHO05D009804 1.3e-06 56.6 76 46.1
PGSC0003DMG400018526 Solanum tuberosum HOM05D008056 ORTHO05D009804 1.3e-06 56.6 71 46.5
MD01G1223300 Malus domestica HOM05D015219 ORTHO05D009804 1.6e-06 56.2 83 49.4
Aqoxy7G00057 Aquilegia oxysepala HOM05D008056 ORTHO05D009804 2.1e-06 55.8 75 42.7
Thecc.03G201500 Theobroma cacao HOM05D015444 ORTHO05D009804 2.1e-06 55.8 76 46.1
GSVIVG01019604001 Vitis vinifera HOM05D013700 ORTHO05D016163 2.1e-06 55.8 74 40.5
HanXRQChr09g0237881 Helianthus annuus HOM05D008056 ORTHO05D009804 2.8e-06 55.5 80 42.5
Potri.015G010500 Populus trichocarpa HOM05D008056 ORTHO05D009804 3.7e-06 55.1 75 49.3
RcHm_v2.0_Chr1g0381651 Rosa chinensis HOM05D015219 ORTHO05D009804 4.8e-06 54.7 73 47.9
CANSAT21G1538 Cannabis sativa HOM05D008056 ORTHO05D016163 6.2e-06 54.3 83 44.6
Nn5g27570 Nelumbo nucifera HOM05D008056 ORTHO05D009804 6.2e-06 54.3 75 41.3


User provided reference genes

Program Settings