Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.5e-140 501.5 303 100.0
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.7e-115 419.9 336 68.5
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.4e-103 378.6 303 68.3
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.3e-102 377.1 311 68.8
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.2e-102 376.3 308 67.2
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.8e-101 373.2 301 66.1
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 9.1e-101 370.9 300 73.0
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 9.1e-101 370.9 307 67.1
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 7.7e-100 367.9 251 76.1
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 3.8e-99 365.5 301 66.4
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.5e-98 363.6 304 64.8
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.2e-97 360.5 301 65.4
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 2.8e-97 359.4 301 64.5
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 3.6e-97 359.0 301 65.1
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 6.1e-97 358.2 300 68.0
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 1.4e-96 357.1 301 62.8
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 1.8e-96 356.7 311 63.7
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.8e-96 356.7 301 62.1
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.7e-95 351.7 301 64.1
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.7e-94 350.1 304 61.8
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.7e-94 350.1 304 61.8
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 2.8e-94 349.4 302 69.2
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.9e-94 348.6 304 61.8
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 6.3e-94 348.2 301 69.1
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 8.3e-94 347.8 304 61.5
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 2.4e-93 346.3 301 61.5
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 4.1e-93 345.5 301 67.8
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 4.1e-93 345.5 304 63.5
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 9.2e-93 344.4 311 62.1
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 9.2e-93 344.4 301 61.5
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.6e-92 343.6 302 61.6
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 5.9e-92 341.7 301 64.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 7.8e-92 341.3 302 60.3
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.0e-91 340.9 301 68.4
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-91 340.1 302 61.3
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 5.0e-91 338.6 300 61.7
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 5.0e-91 338.6 316 58.9
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 2.5e-90 336.3 300 60.0
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 5.6e-90 335.1 301 59.8
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 5.6e-90 335.1 301 59.1
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.6e-89 333.6 315 58.7
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 6.1e-89 331.6 302 59.6
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.0e-88 330.9 301 64.5
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 2.3e-88 329.7 301 58.5
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 2.3e-88 329.7 301 58.5
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 2.6e-87 326.2 300 59.0
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 3.4e-87 325.9 301 59.5
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 4.4e-87 325.5 299 59.5
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 5.7e-87 325.1 302 58.3
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 7.5e-87 324.7 309 62.5
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 9.8e-87 324.3 302 58.6
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 3.7e-86 322.4 305 66.9
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 2.4e-85 319.7 302 57.9
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 5.4e-85 318.5 299 58.5
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 9.2e-85 317.8 304 55.9
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 1.2e-84 317.4 302 57.6
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 1.6e-84 317.0 304 55.9
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 5.9e-84 315.1 300 56.0
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 1.0e-83 314.3 300 60.7
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.3e-83 313.9 309 57.6
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 1.7e-83 313.5 314 54.8
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.3e-83 313.2 301 55.1
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 3.9e-83 312.4 313 57.8
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 8.6e-83 311.2 303 66.0
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.1e-82 310.8 303 66.0
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 5.6e-82 308.5 314 54.1
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.5e-82 307.8 302 57.6
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.2e-81 307.4 314 54.1
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.0e-81 304.7 200 77.0
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 8.0e-81 304.7 305 55.7
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 1.1e-80 304.3 315 54.0
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 1.4e-80 303.9 314 54.1
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 1.4e-80 303.9 314 54.1
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 4.0e-80 302.4 314 53.8
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 6.8e-80 301.6 314 53.8
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 6.8e-80 301.6 314 53.8
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 6.8e-80 301.6 305 56.4
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 2.6e-79 299.7 310 52.9
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 4.4e-79 298.9 314 53.8
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 5.8e-79 298.5 315 53.7
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.3e-78 297.4 302 55.0
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.1e-77 292.4 306 63.7
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 6.6e-75 285.0 313 51.8
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 1.5e-74 283.9 300 51.7
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.5e-74 283.9 265 57.4
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 2.5e-74 283.1 301 53.8
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 7.3e-74 281.6 300 58.0
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 1.6e-73 280.4 300 52.3
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 4.7e-73 278.9 305 60.7
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 1.1e-72 277.7 305 52.8
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.1e-72 277.7 302 61.9
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 4.0e-72 275.8 290 53.1
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 6.8e-72 275.0 200 68.5
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 2.6e-71 273.1 264 54.2
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 1.4e-69 267.3 252 56.7
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 2.4e-69 266.5 271 55.7
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 3.2e-69 266.2 301 58.8
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.6e-67 258.5 259 55.6
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 3.3e-66 256.1 242 67.8
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 3.6e-65 252.7 309 52.4
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.7e-54 217.2 312 43.3
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 4.2e-53 212.6 302 50.7
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 7.3e-50 201.8 232 50.0
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 9.9e-47 191.4 134 72.4
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 3.8e-46 189.5 270 42.2
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.9e-45 187.2 270 44.1
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 1.3e-43 181.0 307 46.6
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 9.6e-42 174.9 302 40.4
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.6e-41 174.1 177 57.6
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 8.1e-41 171.8 177 57.1
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.8e-40 170.6 187 62.6
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.8e-40 170.6 141 67.4
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 1.2e-36 157.9 263 38.8
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.6e-36 157.5 119 66.4
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.5e-34 151.0 272 38.2
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 5.6e-34 149.1 114 69.3
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 1.6e-33 147.5 126 61.1
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 2.1e-33 147.1 261 37.5
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.8e-32 144.1 302 37.7
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 2.3e-27 127.1 187 41.2
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.5e-26 123.6 120 52.5
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 9.7e-26 121.7 120 54.2
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 3.1e-24 116.7 137 50.4
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 4.1e-24 116.3 158 46.8
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 5.5e-21 105.9 68 72.1
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 5.7e-18 95.9 304 31.6
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.2e-13 79.0 154 36.4
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.2e-12 78.2 125 44.8
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 3.7e-09 66.6 79 49.4
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 8.2e-09 65.5 81 61.7
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.4e-08 63.9 80 50.0


User provided reference genes

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