Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.5e-116 422.9 222 100.0
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.6e-94 349.7 224 83.9
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.1e-87 327.0 219 76.3
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.9e-87 326.2 220 78.6
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 8.8e-85 317.4 220 77.7
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.6e-84 315.8 220 74.1
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.4e-82 310.1 220 72.7
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 2.4e-82 309.3 220 73.2
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.2e-81 307.0 222 74.3
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 2.0e-81 306.2 225 74.7
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.0e-81 306.2 231 72.7
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 2.6e-81 305.8 220 73.6
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.6e-81 305.8 217 76.5
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.0e-80 303.9 220 71.4
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.5e-79 300.1 220 70.9
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.9e-79 299.7 224 73.2
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.2e-78 297.0 220 70.9
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.1e-78 296.2 220 70.9
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.7e-78 295.8 220 69.1
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 8.0e-78 294.3 220 71.4
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 6.7e-77 291.2 219 72.1
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.5e-76 290.0 209 69.9
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.6e-76 289.3 219 69.9
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 5.7e-76 288.1 223 69.1
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.7e-75 286.6 209 69.4
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.7e-75 286.6 219 71.2
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-75 286.2 209 68.9
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.2e-75 286.2 220 71.4
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.8e-75 285.8 228 67.1
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.8e-75 285.8 219 71.7
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.8e-75 285.0 219 70.8
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 8.2e-75 284.3 193 74.6
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 8.2e-75 284.3 228 66.7
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 8.2e-75 284.3 221 70.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.4e-74 283.5 223 70.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 5.3e-74 281.6 220 69.1
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 9.1e-74 280.8 216 70.4
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 9.1e-74 280.8 221 67.9
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 2.0e-73 279.6 235 65.5
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 3.5e-73 278.9 180 79.4
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 4.5e-73 278.5 216 68.1
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.2e-72 276.2 220 67.3
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.9e-72 275.8 216 68.5
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.8e-72 275.4 222 68.5
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.0e-72 275.0 220 67.3
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.1e-71 273.9 174 79.9
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 1.1e-71 273.9 216 67.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.5e-71 273.5 220 67.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.5e-71 273.5 224 67.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-71 272.3 220 66.8
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.2e-71 271.9 220 66.8
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 5.5e-71 271.6 218 68.3
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-70 270.4 191 69.1
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.2e-70 270.4 220 66.4
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.7e-70 269.2 220 66.4
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.6e-70 268.9 224 67.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 8.0e-70 267.7 221 67.9
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.3e-69 266.2 228 64.5
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 5.2e-69 265.0 225 63.6
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.0e-68 263.1 214 65.0
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.6e-68 262.7 195 69.2
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 4.4e-68 261.9 223 63.7
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.4e-68 261.9 199 73.9
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.5e-68 261.2 199 73.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.8e-67 259.2 220 64.1
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 3.7e-67 258.8 168 76.8
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 4.8e-67 258.5 217 64.5
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 6.3e-67 258.1 225 64.0
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.1e-66 257.3 192 67.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.8e-66 256.5 220 66.8
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.4e-66 256.1 215 63.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 4.1e-66 255.4 218 63.8
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.6e-65 253.4 199 67.3
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.5e-65 252.3 216 62.0
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 4.5e-65 251.9 162 79.6
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 4.5e-65 251.9 200 69.0
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.8e-64 248.8 215 60.0
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 5.0e-64 248.4 215 60.5
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 5.0e-64 248.4 221 60.2
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 2.5e-63 246.1 176 68.8
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.2e-63 245.7 212 60.4
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-62 243.8 220 62.3
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.2e-62 243.8 199 68.3
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.1e-62 243.0 212 59.9
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.1e-62 243.0 202 62.9
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 4.7e-62 241.9 225 58.2
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.7e-62 241.9 220 59.5
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 8.0e-62 241.1 222 59.5
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.0e-61 240.7 222 57.2
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.8e-61 240.0 170 68.2
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.0e-61 239.2 193 61.7
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-60 237.3 170 68.8
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.2e-60 237.3 168 70.2
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 3.4e-60 235.7 204 60.8
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 4.4e-60 235.3 222 57.7
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 4.4e-60 235.3 222 57.7
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 4.4e-60 235.3 222 57.7
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 5.7e-60 235.0 221 57.5
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.9e-59 231.9 220 56.8
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.9e-59 231.9 220 56.8
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.6e-57 226.9 205 61.0
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.6e-57 226.9 205 61.0
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.3e-56 223.0 220 55.0
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.1e-55 220.7 220 60.0
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 1.9e-55 219.9 217 59.0
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.9e-55 219.9 152 71.7
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.3e-55 218.0 155 70.3
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 7.3e-55 218.0 155 70.3
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.6e-54 216.9 220 53.6
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.3e-53 213.0 215 57.7
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 5.2e-53 211.8 149 70.5
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 6.8e-53 211.5 146 70.5
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 7.5e-52 208.0 145 73.8
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.2e-51 206.5 147 70.7
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 2.4e-50 203.0 147 70.7
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.1e-50 202.2 146 69.2
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.6e-49 200.3 145 69.0
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.0e-49 199.9 145 71.7
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 2.0e-49 199.9 147 70.1
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 2.7e-49 199.5 137 73.7
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.0e-48 197.6 145 65.5
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 1.3e-48 197.2 178 55.6
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.7e-48 196.8 145 68.3
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.9e-48 195.7 125 80.8
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.5e-47 193.7 147 65.3
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.6e-46 190.3 133 78.2
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.8e-46 189.5 173 55.5
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 3.6e-46 189.1 182 59.3
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 3.6e-46 189.1 182 59.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.7e-46 188.7 127 74.8
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 8.0e-46 188.0 149 65.1
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.3e-45 186.4 207 48.8
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-44 184.1 162 59.3
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 2.6e-44 183.0 200 50.0
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.4e-44 182.6 108 87.0
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 9.2e-42 174.5 171 53.2
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 8.6e-40 167.9 226 45.6
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.6e-38 163.7 224 45.1
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.6e-38 163.7 105 80.0
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.7e-38 162.2 105 79.0
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 8.1e-38 161.4 127 63.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.1e-37 159.5 224 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.2e-36 157.5 190 46.8
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 9.8e-36 154.5 108 74.1
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.3e-31 139.0 151 47.7
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 3.2e-26 122.9 87 67.8
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.6e-20 103.2 97 63.9
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.6e-20 101.7 97 63.9
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.4e-18 95.5 88 59.1
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 9.3e-18 94.7 193 33.7
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 6.0e-17 92.0 147 40.1


User provided reference genes

Program Settings