Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.4e-183 644.4 314 100.0
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.2e-172 609.8 313 95.8
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-114 416.4 298 71.1
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.4e-104 383.6 345 62.9
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.7e-92 342.0 292 60.6
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.4e-90 335.5 294 58.5
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.0e-86 324.3 298 55.7
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.7e-86 323.6 295 57.3
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 9.5e-85 317.8 300 56.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.3e-83 313.2 293 54.3
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 9.8e-82 307.8 299 52.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.3e-81 307.4 294 57.1
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.1e-80 304.3 303 53.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 6.0e-79 298.5 303 52.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.1e-77 294.3 296 52.4
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-77 294.3 297 52.5
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.9e-77 293.5 299 52.5
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.3e-77 292.7 293 52.2
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.1e-75 286.2 306 52.6
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.1e-75 286.2 303 50.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 6.8e-75 285.0 299 49.5
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.9e-73 278.9 295 51.9
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 6.4e-73 278.5 298 50.0
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 7.1e-72 275.0 298 51.3
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.2e-72 274.6 295 51.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.7e-71 273.1 298 49.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 7.8e-71 271.6 297 51.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 7.8e-71 271.6 293 47.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.7e-70 270.4 306 50.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.7e-70 270.4 294 50.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.1e-70 268.9 300 48.0
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.1e-70 268.9 299 49.2
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 6.6e-70 268.5 298 50.0
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 6.6e-70 268.5 294 47.6
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 8.6e-70 268.1 296 50.0
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-69 266.5 293 49.1
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 9.6e-69 264.6 299 48.8
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.1e-68 263.5 295 48.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 3.6e-68 262.7 293 48.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.6e-68 262.7 293 48.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-67 261.2 293 48.1
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.4e-67 260.0 296 48.0
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 3.1e-67 259.6 296 48.3
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.0e-67 259.2 293 47.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 6.8e-67 258.5 295 47.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 3.4e-66 256.1 299 45.8
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.9e-66 254.6 291 47.1
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.8e-65 252.7 295 47.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.8e-65 252.7 289 44.6
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.9e-65 252.3 299 45.8
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.1e-64 251.1 294 46.9
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.4e-64 250.8 298 49.7
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.9e-64 250.4 298 49.7
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.4e-64 248.8 325 43.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.4e-64 248.8 298 45.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 2.1e-63 246.9 298 45.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 6.0e-63 245.4 298 45.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.7e-62 243.8 295 46.1
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.7e-62 243.8 290 44.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.5e-61 240.7 294 47.3
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.9e-61 240.4 304 44.4
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.9e-61 240.4 301 44.5
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 4.3e-61 239.2 257 47.9
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.6e-60 237.3 270 48.5
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.8e-60 236.5 197 60.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.8e-60 236.5 298 47.0
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 8.1e-60 235.0 291 46.4
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.8e-59 233.8 294 45.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 5.3e-59 232.3 302 44.0
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.4e-56 224.2 296 45.6
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.1e-55 220.3 292 43.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.7e-55 219.9 333 40.2
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.5e-55 219.5 282 46.8
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 6.0e-55 218.8 208 54.3
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.0e-54 218.0 301 42.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.3e-54 217.6 200 55.5
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.3e-54 217.6 306 40.8
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.9e-54 216.1 209 55.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.1e-51 208.0 291 41.6
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.4e-51 207.6 291 41.6
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 9.0e-51 204.9 288 42.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 7.1e-48 195.3 291 40.5
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 9.3e-48 194.9 291 40.5
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-46 191.0 290 39.7
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.0e-46 189.9 163 57.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 3.9e-46 189.5 293 37.5
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.1e-43 179.9 230 45.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.5e-42 177.6 290 37.2
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.0e-42 177.2 158 53.8
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 6.5e-41 172.2 191 49.7
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.0e-38 164.9 246 42.3
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.0e-38 164.9 220 40.9
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 8.2e-36 155.2 311 33.1
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.4e-35 154.5 305 35.1
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.1e-35 153.3 144 56.9
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 6.9e-35 152.1 220 40.0
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.9e-33 146.7 233 37.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 4.2e-32 142.9 246 37.0
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 6.1e-31 139.0 234 40.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 5.1e-30 136.0 236 37.3
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.5e-29 134.4 136 50.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.5e-29 133.7 234 37.6
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.3e-29 132.9 294 34.4
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.1e-27 128.3 203 37.9
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.4e-27 127.1 305 32.1
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 2.4e-27 127.1 149 45.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.0e-26 124.0 109 60.6
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.7e-26 122.1 115 53.9
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 5.0e-25 119.4 92 62.0
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 6.5e-25 119.0 347 29.1
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.9e-24 117.5 226 31.9
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.2e-24 116.3 262 31.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 7.2e-24 115.5 79 74.7
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.9e-23 112.1 122 52.5
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 7.9e-23 112.1 106 51.9
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.7e-21 105.9 57 87.7
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.7e-21 105.9 294 28.2
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 9.7e-21 105.1 174 36.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.3e-17 94.7 58 72.4
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.8e-17 93.2 57 75.4
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.8e-17 93.2 58 70.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.0e-14 85.1 80 58.8
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.0e-14 85.1 80 58.8
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.7e-12 76.6 230 30.0
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-11 73.9 50 64.0
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 5.3e-11 72.8 93 44.1
Lsat_1_v5_gn_8_10160 Lactuca sativa HOM05D006306 ORTHO05D007912 1.4e-06 58.2 286 23.1
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 4.0e-06 56.6 171 28.7


User provided reference genes

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