Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 2343.5 1193 100.0
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 2013.8 1169 89.6
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 1994.5 1198 86.6
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 0.0e+00 1626.7 1193 74.4
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 0.0e+00 1425.6 1173 68.0
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.6e-236 823.9 1163 48.8
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 2.3e-232 810.1 1003 53.0
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 2.3e-232 810.1 1003 53.0
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.9e-203 713.0 1279 42.0
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.8e-201 706.8 1148 44.6
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.6e-164 584.7 1019 42.7
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 5.1e-139 500.0 1325 36.5
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 4.9e-105 387.1 1200 34.0
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 2.8e-100 371.3 1267 32.2
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 5.8e-90 337.0 1268 29.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 7.5e-90 336.7 1266 30.5
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 5.4e-88 330.5 1248 29.6
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 6.6e-78 297.0 1273 29.5
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 7.3e-77 293.5 1223 30.0
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.4e-72 277.3 1541 27.3
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 9.2e-72 276.6 1215 29.1
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-71 276.2 1538 27.0
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-70 271.9 375 48.3
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 8.6e-70 270.0 1210 29.8
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.9e-69 268.9 1530 27.5
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 7.3e-69 266.9 1317 28.9
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 5.2e-67 260.8 1201 29.5
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.8e-66 257.3 1201 28.1
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.3e-65 256.1 1186 28.4
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.9e-65 254.2 1397 27.1
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.1e-64 253.1 1143 28.7
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.4e-64 251.9 1144 28.3
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 3.2e-64 251.5 1282 28.1
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.5e-63 248.1 1247 26.6
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 4.6e-63 247.7 1230 29.2
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 6.6e-62 243.8 1280 27.3
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.3e-61 241.5 1245 28.3
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 4.3e-61 241.1 1150 29.1
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.3e-61 241.1 1246 28.2
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 7.3e-61 240.4 1123 28.9
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 9.6e-61 240.0 1333 27.3
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.3e-60 239.6 1521 25.8
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.8e-60 237.7 1244 27.4
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 6.2e-60 237.3 1240 29.0
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.8e-59 235.7 1200 27.3
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.1e-59 235.0 1239 27.8
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 3.1e-59 235.0 1123 29.1
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.0e-59 234.6 1247 27.6
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 5.3e-59 234.2 1257 28.2
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 2.0e-58 232.3 1225 27.5
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 2.6e-58 231.9 1143 29.0
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 3.4e-58 231.5 610 35.6
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 2.9e-57 228.4 1143 28.9
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 5.4e-56 224.2 506 37.4
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.1e-55 222.2 1103 28.9
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.1e-55 222.2 1103 28.9
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.3e-54 218.8 1204 27.2
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.0e-54 218.4 1284 27.2
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.5e-53 216.1 1127 27.8
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 8.1e-52 210.3 1091 28.7
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-51 209.5 1352 26.3
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 5.3e-51 207.6 1251 27.7
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.2e-50 206.5 1309 26.5
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.9e-49 201.8 1295 26.3
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.4e-48 198.7 1264 26.3
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 5.5e-48 197.6 1208 26.1
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.0e-46 193.4 1098 27.5
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 3.0e-46 191.8 1232 26.9
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 1.1e-43 183.3 228 44.7
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.8e-43 182.6 1412 24.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.1e-43 181.8 1513 24.7
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 3.9e-38 164.9 757 29.5
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.8e-36 158.7 745 26.8
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 1.8e-35 156.0 1080 28.3
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.9e-32 146.0 1479 24.9
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.3e-30 139.8 1234 24.2
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 3.0e-30 138.7 1230 24.3
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 8.7e-30 137.1 1125 25.1
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.5e-29 136.3 1312 25.0
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 1.5e-29 136.3 1221 24.5
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 4.3e-29 134.8 1383 24.0
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.6e-28 132.9 1282 23.4
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 3.4e-26 125.2 1471 23.4
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.9e-24 119.4 1435 23.7
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 6.1e-23 114.4 1225 24.6
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 6.7e-22 110.9 1220 24.3
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 2.2e-20 105.9 1211 24.7
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.2e-20 105.9 1328 24.5
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 2.8e-20 105.5 1213 23.7
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 8.2e-20 104.0 764 25.3
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.1e-19 102.1 1216 24.7
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 4.1e-19 101.7 1122 25.2
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.5e-18 99.8 861 23.5
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.5e-18 98.2 365 31.5
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 2.9e-17 95.5 299 31.1
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.5e-16 92.4 530 27.9
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 2.3e-14 85.9 418 27.0
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 3.0e-14 85.5 348 28.2
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 9.7e-13 80.5 1271 23.1
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 8.2e-12 77.4 1085 23.2
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.8e-11 76.3 331 31.1
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 4.1e-11 75.1 365 26.6
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.0e-11 74.3 445 25.2
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 9.1e-11 73.9 201 34.8
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.2e-10 73.6 1174 23.2
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.2e-10 73.6 913 23.3
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 7.7e-10 70.9 318 26.7
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 1.0e-09 70.5 358 26.8
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.0e-09 70.5 358 26.8
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 1.3e-09 70.1 355 27.3
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.3e-09 70.1 355 26.2
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 2.2e-09 69.3 358 29.1
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.9e-09 68.9 99 47.5
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 8.5e-09 67.4 974 22.4
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 1.5e-08 66.6 263 33.5
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 1.9e-08 66.2 218 32.6
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.9e-08 66.2 343 27.7
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 1.9e-08 66.2 244 29.9
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 2.5e-08 65.9 1138 24.3
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 3.2e-08 65.5 341 26.7
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 5.5e-08 64.7 369 25.5
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 1.6e-07 63.2 392 28.1
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 4.7e-07 61.6 354 26.3
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 4.7e-07 61.6 354 26.3
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 4.7e-07 61.6 212 31.6
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 1.4e-06 60.1 315 26.0
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 2.3e-06 59.3 1152 24.8
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 2.3e-06 59.3 635 23.9
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.3e-06 59.3 321 28.7


User provided reference genes

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