Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 1.0e-125 453.4 224 100.0
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.9e-75 285.8 224 69.2
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 3.9e-32 142.5 205 45.9
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 8.7e-32 141.4 195 46.7
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.8e-28 128.6 210 42.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.9e-24 115.9 204 40.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.6e-22 110.5 229 37.6
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.1e-22 110.2 222 38.3
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.8e-22 109.8 202 38.1
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.1e-21 107.8 190 36.8
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 9.0e-21 104.8 189 36.0
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 2.6e-20 103.2 179 36.9
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.6e-20 103.2 182 36.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.6e-20 103.2 222 35.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.6e-20 103.2 219 37.9
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.4e-20 102.8 196 38.3
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.4e-20 102.8 182 36.3
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.9e-20 102.1 182 36.3
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 7.6e-20 101.7 215 34.4
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.3e-19 100.9 216 35.2
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.9e-19 99.8 218 36.2
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 6.5e-19 98.6 201 37.8
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 8.5e-19 98.2 186 36.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 8.5e-19 98.2 219 35.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 8.5e-19 98.2 220 37.3
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.1e-18 97.8 216 34.7
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.4e-18 97.4 237 34.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 1.4e-18 97.4 227 35.7
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 4.2e-18 95.9 217 35.5
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 5.5e-18 95.5 202 34.2
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.5e-18 95.5 220 34.5
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 5.5e-18 95.5 173 37.6
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 7.2e-18 95.1 226 36.7
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 7.2e-18 95.1 221 34.8
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-17 94.4 222 35.6
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.1e-17 93.6 241 33.6
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.7e-17 93.2 224 33.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 2.7e-17 93.2 206 35.0
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.7e-17 93.2 187 36.9
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 3.6e-17 92.8 183 33.3
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 4.6e-17 92.4 206 33.5
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 4.6e-17 92.4 205 32.2
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-17 92.0 205 32.2
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.9e-17 91.7 211 30.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.9e-17 91.7 200 32.5
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.0e-16 91.3 194 33.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.8e-16 90.5 210 33.3
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.3e-16 90.1 235 31.1
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.9e-16 89.4 203 35.0
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.9e-16 89.4 205 31.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 3.9e-16 89.4 185 33.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 5.1e-16 89.0 179 33.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 8.7e-16 88.2 177 34.5
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.1e-15 87.8 186 36.0
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.5e-15 87.4 208 35.1
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.9e-15 87.0 179 33.5
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.9e-15 87.0 193 31.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.5e-15 86.7 171 36.3
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.5e-15 86.7 213 34.7
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.3e-15 86.3 205 36.1
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.3e-15 85.9 193 36.3
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.3e-15 85.9 213 34.3
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 4.3e-15 85.9 191 32.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 5.7e-15 85.5 185 34.6
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.7e-15 85.5 211 33.6
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 7.4e-15 85.1 208 30.3
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 9.7e-15 84.7 186 34.4
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 9.7e-15 84.7 220 32.7
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 9.7e-15 84.7 184 32.1
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-14 84.3 196 34.2
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.3e-14 84.3 204 31.9
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.6e-14 84.0 196 31.1
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 2.8e-14 83.2 182 32.4
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.8e-14 83.2 182 32.4
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 3.7e-14 82.8 200 30.0
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 3.7e-14 82.8 174 35.1
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 4.8e-14 82.4 198 28.8
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.8e-14 82.4 196 31.6
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 6.3e-14 82.0 208 33.2
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 8.2e-14 81.6 225 31.1
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.1e-13 81.3 202 30.2
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-13 80.9 223 34.1
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.8e-13 80.5 186 32.8
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.8e-13 80.5 186 32.8
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.4e-13 80.1 176 30.7
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 2.4e-13 80.1 207 30.9
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 2.4e-13 80.1 196 32.1
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 3.1e-13 79.7 230 34.3
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 5.3e-13 79.0 207 31.9
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.3e-13 79.0 183 31.7
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.0e-13 78.2 129 39.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.2e-12 77.8 176 30.7
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-12 77.8 184 31.5
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.2e-12 77.8 206 30.1
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-12 77.4 232 32.8
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.5e-12 77.4 186 29.6
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 2.0e-12 77.0 229 30.1
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 2.6e-12 76.6 243 29.6
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.9e-12 75.5 184 28.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.0e-11 74.7 189 31.7
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.2e-11 73.6 160 33.8
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.9e-11 73.2 178 29.8
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.5e-10 70.1 153 32.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.5e-10 70.1 220 29.5
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-10 68.6 169 34.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 7.2e-10 68.6 194 29.9
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.2e-09 67.8 223 27.8
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.2e-09 67.8 223 27.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.2e-09 67.8 216 28.2
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.2e-09 67.8 199 28.6
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.2e-09 67.8 187 29.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.2e-09 67.8 220 29.1
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.6e-09 67.4 204 29.4
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.1e-09 67.0 223 30.5
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 2.1e-09 67.0 219 28.8
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 4.6e-09 65.9 221 32.1
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 4.6e-09 65.9 216 30.1
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.0e-08 63.2 122 36.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.0e-07 60.5 195 28.7
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 3.3e-07 59.7 210 30.0
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-06 57.0 117 32.5
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 4.8e-06 55.8 74 39.2


User provided reference genes

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