Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.2e-88 329.7 155 100.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 5.8e-35 151.4 155 51.6
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 6.0e-32 141.4 157 49.7
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.3e-31 139.4 157 48.4
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.5e-30 136.7 158 48.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.5e-30 136.0 160 48.1
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 3.3e-30 135.6 155 48.4
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.3e-30 135.6 155 48.4
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 4.3e-30 135.2 158 47.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.6e-30 134.0 159 45.9
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.6e-29 133.3 156 48.1
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.6e-29 133.3 160 46.9
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.1e-29 132.9 157 47.8
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.1e-29 132.9 153 46.4
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-28 130.2 155 46.5
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.8e-28 129.8 155 46.5
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.8e-28 129.8 155 45.8
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.8e-28 129.8 161 46.0
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-28 129.4 156 45.5
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.4e-28 129.4 156 45.5
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.4e-28 129.4 157 47.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.0e-28 128.6 155 45.8
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.0e-28 128.6 153 46.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 5.3e-28 128.3 153 47.1
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 6.9e-28 127.9 153 45.8
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 6.9e-28 127.9 155 45.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.2e-27 127.1 154 44.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.2e-27 127.1 153 46.4
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.0e-27 126.3 153 44.4
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.6e-27 125.9 151 45.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.6e-27 125.9 153 45.1
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.4e-27 125.6 157 46.5
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.5e-27 125.2 155 45.2
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 5.8e-27 124.8 151 44.4
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 5.8e-27 124.8 151 44.4
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 5.8e-27 124.8 154 45.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.0e-26 124.0 155 44.5
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.0e-26 124.0 156 44.2
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.0e-26 124.0 155 44.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.0e-26 124.0 155 45.2
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.3e-26 123.6 153 45.8
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.3e-26 123.6 153 45.8
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.3e-26 123.6 154 45.5
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.7e-26 123.2 156 44.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.2e-26 122.9 154 44.2
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.2e-26 122.9 153 43.8
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.9e-26 122.5 156 43.6
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 2.9e-26 122.5 153 43.8
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.9e-26 122.5 151 43.7
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 3.8e-26 122.1 151 43.7
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.8e-26 122.1 155 43.2
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 4.9e-26 121.7 151 43.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 4.9e-26 121.7 154 43.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.5e-26 121.3 155 44.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 8.4e-26 120.9 155 44.5
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 8.4e-26 120.9 155 44.5
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 8.4e-26 120.9 155 44.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.4e-26 120.9 152 44.7
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 8.4e-26 120.9 153 43.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 8.4e-26 120.9 149 47.0
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 8.4e-26 120.9 151 42.4
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 8.4e-26 120.9 153 44.4
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-25 120.6 155 42.6
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.1e-25 120.6 155 43.2
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.9e-25 119.8 78 78.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 1.9e-25 119.8 154 42.9
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 1.9e-25 119.8 157 44.6
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.9e-25 119.8 153 43.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.5e-25 119.4 159 42.1
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.2e-25 118.6 153 43.8
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 7.1e-25 117.9 149 44.3
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 9.3e-25 117.5 154 42.9
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 9.3e-25 117.5 155 41.9
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 9.3e-25 117.5 155 41.9
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 9.3e-25 117.5 155 41.9
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-24 117.1 155 41.9
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-24 117.1 155 41.9
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.2e-24 117.1 153 43.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.2e-24 117.1 159 42.8
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.6e-24 116.7 155 40.6
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 2.7e-24 115.9 151 41.7
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 2.7e-24 115.9 151 43.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 2.7e-24 115.9 151 43.0
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 2.7e-24 115.9 155 41.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 4.6e-24 115.2 153 42.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 4.6e-24 115.2 153 42.5
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 4.6e-24 115.2 151 41.7
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.9e-24 114.4 155 42.6
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 7.9e-24 114.4 154 41.6
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.3e-23 113.6 152 40.1
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.3e-23 113.6 153 41.8
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.3e-23 113.6 161 42.9
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.3e-23 112.8 152 40.1
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 5.1e-23 111.7 153 41.8
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 5.1e-23 111.7 153 41.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 5.1e-23 111.7 153 41.8
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 6.7e-23 111.3 153 41.8
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 6.7e-23 111.3 76 76.3
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 8.7e-23 110.9 153 41.8
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.7e-23 110.9 153 41.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.5e-22 110.2 149 41.6
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 3.3e-22 109.0 153 41.2
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 4.3e-22 108.6 62 85.5
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 5.7e-22 108.2 153 41.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 5.7e-22 108.2 149 42.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 5.7e-22 108.2 153 41.2
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 7.4e-22 107.8 143 41.3
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 9.6e-22 107.5 76 69.7
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-21 107.1 151 40.4
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-21 107.1 151 41.1
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.3e-21 107.1 150 40.0
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.1e-21 106.3 153 40.5
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.8e-21 105.9 133 45.1
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-21 105.1 151 41.1
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 8.2e-21 104.4 62 79.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.8e-20 103.2 63 76.2
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.8e-20 103.2 63 79.4
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 3.1e-20 102.4 62 74.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.1e-20 102.4 60 76.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 9.0e-20 100.9 72 68.1
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.5e-19 100.1 73 71.2
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.5e-19 100.1 59 79.7
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.5e-19 100.1 59 79.7
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.5e-19 100.1 59 76.3
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.0e-19 99.8 63 76.2
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 2.6e-19 99.4 58 81.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 4.5e-19 98.6 60 70.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.5e-19 98.6 58 79.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 7.6e-19 97.8 62 77.4
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 7.6e-19 97.8 64 71.9
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.7e-18 96.7 62 75.8
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-18 96.3 62 75.8
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-18 96.3 64 70.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.8e-18 95.5 54 75.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.0e-18 95.1 64 71.9
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 5.0e-18 95.1 61 73.8
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 6.5e-18 94.7 61 72.1
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.9e-17 93.2 133 40.6
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 2.2e-13 79.7 151 33.8
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 4.8e-13 78.6 150 33.3
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-12 76.6 61 63.9
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.5e-09 66.2 131 30.5
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.2e-08 63.9 68 48.5


User provided reference genes

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