Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0177400 Rhododendron simsii HOM05D001680 ORTHO05D001596 1.8e-45 185.7 101 100.0
Rhsim09G0164400 Rhododendron simsii HOM05D001680 ORTHO05D001596 5.0e-19 97.8 127 55.1
Rhsim09G0164500 Rhododendron simsii HOM05D001680 ORTHO05D001596 6.7e-16 87.4 124 53.2
Actinidia29215 Actinidia chinensis HOM05D001680 ORTHO05D001596 1.6e-12 76.3 132 45.5
Ciclev10016496m.g Citrus clementina HOM05D001680 ORTHO05D001596 3.5e-12 75.1 132 43.2
Peaxi162Scf00069g01510 Petunia axillaris HOM05D001680 ORTHO05D001596 3.5e-12 75.1 116 46.6
Ciclev10032608m.g Citrus clementina HOM05D001680 ORTHO05D001596 5.9e-12 74.3 132 41.7
PGR044G2295 Punica granatum HOM05D001680 ORTHO05D001596 1.3e-11 73.2 125 41.6
PGR044G0512 Punica granatum HOM05D001680 ORTHO05D001596 1.7e-11 72.8 132 40.9
Cpa.g.sc1.378 Carica papaya HOM05D001680 ORTHO05D001596 2.2e-11 72.4 132 42.4
Hma1.2p1_0067F.1_g037080 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 2.9e-11 72.0 132 42.4
Sabra08G0037900 Salix brachista HOM05D001680 ORTHO05D001596 5.0e-11 71.2 132 40.9
CSS0042263 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 8.5e-11 70.5 127 41.7
Nitab4.5_0005167g0050 Nicotiana tabacum HOM05D001680 ORTHO05D001596 8.5e-11 70.5 132 42.4
CSS0017065 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 1.1e-10 70.1 127 40.9
Cc02_g08140 Coffea canephora HOM05D001680 ORTHO05D001596 1.1e-10 70.1 132 40.2
Dinv31436 Davidia involucrata HOM05D001680 ORTHO05D001596 1.1e-10 70.1 132 42.4
Eucgr.J00043 Eucalyptus grandis HOM05D001680 ORTHO05D001596 1.1e-10 70.1 134 42.5
PGSC0003DMG400012768 Solanum tuberosum HOM05D001680 ORTHO05D001596 1.1e-10 70.1 134 40.3
Nitab4.5_0012494g0010 Nicotiana tabacum HOM05D001680 ORTHO05D001596 1.5e-10 69.7 132 42.4
Peaxi162Scf00069g00153 Petunia axillaris HOM05D001680 ORTHO05D001596 1.5e-10 69.7 98 49.0
PGR044G0149 Punica granatum HOM05D001680 ORTHO05D001596 1.5e-10 69.7 132 39.4
RcHm_v2.0_Chr1g0366321 Rosa chinensis HOM05D001680 ORTHO05D001596 1.9e-10 69.3 132 43.2
THA.LOC104805679 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 3.2e-10 68.6 124 39.5
GSVIVG01016583001 Vitis vinifera HOM05D001680 ORTHO05D001596 3.2e-10 68.6 133 37.6
Eucgr.J00044 Eucalyptus grandis HOM05D001680 ORTHO05D001596 4.2e-10 68.2 134 41.8
Sc13g0005160 Simmondsia chinensis HOM05D001680 ORTHO05D001596 5.5e-10 67.8 132 38.6
Aa31LG2G2510 Aethionema arabicum HOM05D001680 ORTHO05D001596 7.2e-10 67.4 127 39.4
MELO3C025448.2 Cucumis melo HOM05D001680 ORTHO05D001596 7.2e-10 67.4 132 39.4
Carub.0002s1134 Capsella rubella HOM05D001680 ORTHO05D001596 9.4e-10 67.0 129 41.9
Sopen01g037290 Solanum pennellii HOM05D001680 ORTHO05D001596 9.4e-10 67.0 132 38.6
C09p04530 Brassica napus HOM05D001680 ORTHO05D001596 1.6e-09 66.2 129 41.1
CARHR057230 Cardamine hirsuta HOM05D001680 ORTHO05D001596 1.6e-09 66.2 127 37.8
AT1G65520 Arabidopsis thaliana HOM05D001680 ORTHO05D001596 2.1e-09 65.9 127 39.4
QL08p059070 Quercus lobata HOM05D001680 ORTHO05D001596 2.1e-09 65.9 132 37.9
Sp5g20440 Schrenkiella parvula HOM05D001680 ORTHO05D001596 2.1e-09 65.9 129 40.3
Solyc01g091520.3 Solanum lycopersicum HOM05D001680 ORTHO05D001596 2.1e-09 65.9 132 38.6
THA.LOC104824565 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 2.1e-09 65.9 132 38.6
Sabra10G0160400 Salix brachista HOM05D001680 ORTHO05D001596 2.7e-09 65.5 132 42.4
THA.LOC104823834 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 2.7e-09 65.5 127 40.9
BcaB04g19539 Brassica carinata HOM05D001680 ORTHO05D001596 3.6e-09 65.1 129 38.8
BcaB04g19544 Brassica carinata HOM05D001680 ORTHO05D001596 3.6e-09 65.1 129 40.3
BolC9t53382H Brassica oleracea HOM05D001680 ORTHO05D001596 3.6e-09 65.1 129 40.3
CiPaw.15G086600 Carya illinoinensis HOM05D001680 ORTHO05D001596 3.6e-09 65.1 132 38.6
ClCG09G020040 Citrullus lanatus HOM05D001680 ORTHO05D001596 3.6e-09 65.1 132 38.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 3.6e-09 65.1 132 37.1
CiPaw.15G086700 Carya illinoinensis HOM05D001680 ORTHO05D001596 4.7e-09 64.7 132 38.6
Migut.N00249 Erythranthe guttata HOM05D001680 ORTHO05D001596 4.7e-09 64.7 124 38.7
Potri.010G207800 Populus trichocarpa HOM05D001680 ORTHO05D001596 4.7e-09 64.7 132 41.7
THA.LOC104805984 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 4.7e-09 64.7 132 39.4
CiPaw.02G182600 Carya illinoinensis HOM05D001680 ORTHO05D001596 6.1e-09 64.3 124 38.7
Thhalv10019107m.g Eutrema salsugineum HOM05D001680 ORTHO05D001596 6.1e-09 64.3 129 38.8
Prupe.2G231700 Prunus persica HOM05D001680 ORTHO05D001596 6.1e-09 64.3 132 38.6
A02p13250 Brassica napus HOM05D001680 ORTHO05D001596 8.0e-09 63.9 129 38.8
BraA02t06382Z Brassica rapa HOM05D001680 ORTHO05D001596 8.0e-09 63.9 129 38.8
Dinv25992 Davidia involucrata HOM05D001680 ORTHO05D001596 8.0e-09 63.9 132 38.6
ECA238G3779 Erigeron canadensis HOM05D001680 ORTHO05D001596 8.0e-09 63.9 132 36.4
Manes.10G032900 Manihot esculenta HOM05D001680 ORTHO05D001596 8.0e-09 63.9 132 42.4
Atru.chr12.501 Acer truncatum HOM05D001680 ORTHO05D001596 1.0e-08 63.5 132 37.9
Atru.chr12.502 Acer truncatum HOM05D001680 ORTHO05D001596 1.0e-08 63.5 132 37.9
COL.COLO4_14966 Corchorus olitorius HOM05D001680 ORTHO05D001596 1.0e-08 63.5 132 39.4
MD07G1194300 Malus domestica HOM05D001680 ORTHO05D001596 1.0e-08 63.5 132 38.6
Lj3A796T22 Lonicera japonica HOM05D001680 ORTHO05D001596 1.4e-08 63.2 124 37.9
BcaC03g14708 Brassica carinata HOM05D001680 ORTHO05D001596 1.8e-08 62.8 124 38.7
C02p21430 Brassica napus HOM05D001680 ORTHO05D001596 1.8e-08 62.8 124 38.7
BolC2t08281H Brassica oleracea HOM05D001680 ORTHO05D001596 1.8e-08 62.8 124 38.7
CSS0036488 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 1.8e-08 62.8 132 37.1
MD01G1124200 Malus domestica HOM05D001680 ORTHO05D001596 1.8e-08 62.8 132 38.6
Rhsim02G0035300 Rhododendron simsii HOM05D001680 ORTHO05D001596 1.8e-08 62.8 132 37.9
AL2G22470 Arabidopsis lyrata HOM05D001680 ORTHO05D001596 2.3e-08 62.4 127 37.8
TWI38G0919 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 2.3e-08 62.4 132 36.4
Actinidia04463 Actinidia chinensis HOM05D001680 ORTHO05D001596 3.0e-08 62.0 132 35.6
A09p04280 Brassica napus HOM05D001680 ORTHO05D001596 3.0e-08 62.0 129 39.5
BraA09t36065Z Brassica rapa HOM05D001680 ORTHO05D001596 3.0e-08 62.0 129 39.5
HanXRQChr14g0458271 Helianthus annuus HOM05D001680 ORTHO05D001596 3.0e-08 62.0 132 39.4
MD01G1124100 Malus domestica HOM05D001680 ORTHO05D001596 3.0e-08 62.0 130 37.7
CANSAT01G1859 Cannabis sativa HOM05D001680 ORTHO05D001596 4.0e-08 61.6 130 38.5
Lj8A86G40 Lonicera japonica HOM05D001680 ORTHO05D001596 4.0e-08 61.6 127 35.4
BcaB05g24121 Brassica carinata HOM05D001680 ORTHO05D001596 5.2e-08 61.2 127 36.2
Lj1P934T39 Lonicera japonica HOM05D001680 ORTHO05D001596 5.2e-08 61.2 132 36.4
CsaV3_5G026420 Cucumis sativus L. HOM05D001680 ORTHO05D001596 6.7e-08 60.8 132 37.1
Sc09g0007020 Simmondsia chinensis HOM05D001680 ORTHO05D001596 6.7e-08 60.8 132 37.9
unitig_52.g17410 Utricularia gibba HOM05D001680 ORTHO05D001596 6.7e-08 60.8 124 37.1
DCAR_027659 Daucus carota HOM05D001680 ORTHO05D001596 8.8e-08 60.5 132 39.4
THA.LOC104819142 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 8.8e-08 60.5 132 38.6
TWI38G1836 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 8.8e-08 60.5 132 37.1
FAN10G1833 Fragaria x ananassa HOM05D001680 ORTHO05D001596 1.1e-07 60.1 132 38.6
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.5e-07 59.7 128 38.3
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.5e-07 59.7 128 38.3
Dinv44657 Davidia involucrata HOM05D001680 ORTHO05D001596 1.5e-07 59.7 132 37.9
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 2.0e-07 59.3 132 35.6
FAN01G2736 Fragaria x ananassa HOM05D001680 ORTHO05D001596 2.0e-07 59.3 132 39.4
Medtr7g024300 Medicago truncatula HOM05D001680 ORTHO05D001596 2.0e-07 59.3 128 37.5
SalBow3G2541 Salvia bowleyana HOM05D001680 ORTHO05D001596 2.0e-07 59.3 124 37.1
Thecc.10G047000 Theobroma cacao HOM05D001680 ORTHO05D001596 2.0e-07 59.3 134 36.6
TAR486G0003 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.0e-07 59.3 132 34.1
Cc03_g05150 Coffea canephora HOM05D001680 ORTHO05D001596 2.6e-07 58.9 124 35.5
DCAR_015195 Daucus carota HOM05D001680 ORTHO05D001596 2.6e-07 58.9 126 37.3
Manes.07G113600 Manihot esculenta HOM05D001680 ORTHO05D001596 2.6e-07 58.9 127 39.4
HanXRQChr03g0092231 Helianthus annuus HOM05D001680 ORTHO05D001596 3.3e-07 58.5 132 35.6
SGA_v2.0_scaffold79G25659 Striga asiatica HOM05D001680 ORTHO05D001596 4.4e-07 58.2 124 37.1
Hma1.2p1_0310F.1_g120700 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 5.7e-07 57.8 132 34.8
MBI06_g15768_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 5.7e-07 57.8 132 35.6
Lalb_Chr17g0336201 Lupinus albus HOM05D001680 ORTHO05D001596 9.7e-07 57.0 130 34.6
Psat3g180640 Pisum sativum HOM05D001680 ORTHO05D001596 9.7e-07 57.0 128 35.2
Psat3g180720 Pisum sativum HOM05D001680 ORTHO05D001596 9.7e-07 57.0 128 35.9
PGSC0003DMG400016285 Solanum tuberosum HOM05D001680 ORTHO05D001596 9.7e-07 57.0 124 35.5
MSTRG.3595 Avicennia marina HOM05D001680 ORTHO05D001596 1.3e-06 56.6 133 36.8
Oeu037888.1 Olea europaea HOM05D001680 ORTHO05D001596 1.3e-06 56.6 132 37.1
Lsat_1_v5_gn_2_117781 Lactuca sativa HOM05D001680 ORTHO05D001596 1.7e-06 56.2 132 36.4
MBI06_g15769_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 1.7e-06 56.2 132 36.4
FvH4_7g21971 Fragaria vesca HOM05D001680 ORTHO05D001596 2.2e-06 55.8 132 37.9
Lj6g0014672 Lotus japonicus HOM05D001680 ORTHO05D001596 2.2e-06 55.8 133 33.1
Sc06g0007420 Simmondsia chinensis HOM05D001680 ORTHO05D001596 2.2e-06 55.8 132 33.3
Zm00001eb338180 Zea mays HOM05D001680 ORTHO05D001596 2.2e-06 55.8 133 33.8
Atru.chr12.500 Acer truncatum HOM05D001680 ORTHO05D001596 2.8e-06 55.5 130 36.9
Glyma.18G288900 Glycine max HOM05D001680 ORTHO05D001596 2.8e-06 55.5 133 35.3
TAR624G0040 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.8e-06 55.5 132 31.8
BcaC04g23801 Brassica carinata HOM05D001680 ORTHO05D001596 3.7e-06 55.1 41 70.7
CAN.G680.30 Capsicum annuum HOM05D001680 ORTHO05D001596 3.7e-06 55.1 107 37.4
Cfa008349 Carpinus fangiana HOM05D001680 ORTHO05D001596 3.7e-06 55.1 132 32.6
ECA238G3773 Erigeron canadensis HOM05D001680 ORTHO05D001596 3.7e-06 55.1 132 34.8
Lsat_1_v5_gn_5_72480 Lactuca sativa HOM05D001680 ORTHO05D001596 3.7e-06 55.1 132 34.1
TPR.G15482 Trifolium pratense HOM05D001680 ORTHO05D001596 3.7e-06 55.1 132 33.3
Ca_07245_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 4.8e-06 54.7 128 35.2
Cc02_g08150 Coffea canephora HOM05D001680 ORTHO05D001596 4.8e-06 54.7 132 36.4
Lsat_1_v5_gn_3_122260 Lactuca sativa HOM05D001680 ORTHO05D001596 4.8e-06 54.7 132 33.3
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.8e-06 54.7 132 34.8
Nn1g04492 Nelumbo nucifera HOM05D001680 ORTHO05D001596 6.3e-06 54.3 132 31.8
Sed0024318 Sechium edule HOM05D001680 ORTHO05D001596 6.3e-06 54.3 132 34.1
Potri.010G073700 Populus trichocarpa HOM05D001680 ORTHO05D001596 8.2e-06 53.9 133 34.6
Solyc06g053670.1 Solanum lycopersicum HOM05D001680 ORTHO05D001596 8.2e-06 53.9 124 33.1
TAR486G0005 Trochodendron aralioides HOM05D001680 ORTHO05D001596 8.2e-06 53.9 132 31.8


User provided reference genes

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