Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1584.3 836 100.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1407.1 842 87.4
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1392.9 842 86.5
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1388.6 842 86.3
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1359.0 843 84.1
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1344.3 842 83.5
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1340.5 842 83.1
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1339.3 855 85.5
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1335.1 842 82.3
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1332.4 839 83.0
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1331.6 840 82.4
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1331.2 841 82.8
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1327.4 840 82.4
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1318.1 840 82.3
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1313.5 840 82.3
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1310.8 840 81.1
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 840 81.3
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1306.2 840 80.5
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 840 81.5
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 839 80.7
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 841 80.4
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1300.0 840 80.1
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1298.9 840 81.0
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1294.6 840 81.0
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1290.4 840 79.6
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1287.7 840 79.5
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 840 79.6
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 840 79.6
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1281.5 840 79.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1279.6 840 79.5
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1279.6 840 79.3
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1279.2 842 79.6
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1278.8 840 79.4
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 840 80.0
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1277.3 840 80.0
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1275.8 841 78.8
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1275.4 840 78.9
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1273.1 842 78.5
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1271.9 841 79.5
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1271.9 840 77.4
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1271.5 841 79.3
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1270.8 840 78.9
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1269.6 847 78.0
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1269.2 840 78.9
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 841 79.2
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 834 79.4
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 840 77.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1262.3 840 78.7
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1261.5 840 77.1
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 841 79.0
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 860 76.9
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1252.3 932 72.4
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1251.1 842 77.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1250.0 840 76.4
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 844 76.8
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 841 76.7
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1240.7 841 76.7
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1240.7 841 76.6
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1239.6 841 76.6
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1238.4 839 76.3
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1238.0 841 76.2
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1237.6 845 76.9
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1235.3 840 77.4
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1234.9 841 76.1
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1233.8 841 76.8
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 840 77.7
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 841 76.0
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1229.2 840 76.5
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1227.2 840 76.4
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 842 75.5
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 842 76.0
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1226.1 857 74.7
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 857 74.7
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 842 75.8
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1222.2 841 76.0
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1222.2 840 76.7
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1220.7 842 75.8
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 840 74.8
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1216.4 840 76.5
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 841 75.4
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 842 75.3
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1215.7 842 75.3
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1214.1 840 75.1
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1210.3 841 76.0
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1205.7 856 75.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1200.3 856 75.1
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1189.5 808 76.7
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1180.6 842 73.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1174.8 747 81.1
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1174.5 840 72.7
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1165.2 860 72.2
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1159.4 1001 63.7
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1156.0 842 73.8
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1154.4 842 72.9
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1131.3 725 81.4
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1104.7 841 69.0
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.3e-301 1039.6 838 68.4
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.3e-301 1039.6 685 78.7
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.2e-283 979.9 724 70.4
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.2e-257 891.7 851 56.6
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 9.2e-252 874.0 863 56.2
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 2.9e-250 869.0 520 84.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 4.9e-229 798.5 748 58.8
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.2e-228 795.8 547 75.0
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.2e-228 795.8 546 74.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 4.1e-228 795.4 839 52.2
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.4e-223 779.6 609 67.3
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.9e-213 746.1 617 65.6
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.4e-207 726.5 511 74.6
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 5.1e-194 682.2 906 44.8
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 3.1e-191 672.9 431 83.3
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.9e-189 666.4 565 64.1
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 7.2e-180 635.2 448 77.2
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.0e-165 588.2 448 70.1
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 4.0e-154 549.7 343 81.6
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 4.0e-154 549.7 401 71.1
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.3e-146 523.9 399 71.7
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.2e-119 433.7 371 64.7
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.5e-116 424.9 341 65.7
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 9.5e-116 422.2 293 76.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 4.6e-110 403.3 426 56.8
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.4e-103 381.7 265 75.5
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 5.3e-98 363.2 230 78.3
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 6.9e-98 362.8 230 78.3
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 2.0e-97 361.3 863 32.1
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-76 292.0 210 70.5
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.2e-73 282.3 867 27.8
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.1e-70 270.0 231 65.8
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.4e-66 258.1 267 55.8
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.0e-60 238.4 200 62.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.0e-57 228.4 288 47.2
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.6e-57 228.0 179 69.3
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 3.8e-56 224.2 184 65.8
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.8e-53 215.3 209 64.6
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 5.7e-44 183.7 121 71.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 9.7e-44 183.0 125 78.4
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 1.5e-39 169.1 105 87.6
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 2.0e-36 158.7 100 79.0
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 1.3e-35 156.0 100 78.0
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.7e-35 155.6 95 82.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 8.3e-35 153.3 97 78.4
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 3.5e-33 147.9 139 55.4
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 4.5e-33 147.5 95 71.6
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 5.9e-33 147.1 95 72.6
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.5e-31 139.8 95 73.7
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.4e-29 136.0 95 74.7
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.8e-29 135.6 235 40.4
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 3.8e-24 117.9 174 44.3
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 5.6e-23 114.0 87 73.6
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 3.6e-22 111.3 138 49.3
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-21 109.8 249 35.7
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.8e-21 109.0 82 73.2
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 2.3e-21 108.6 87 67.8
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.4e-20 104.4 99 47.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 2.4e-18 98.6 91 61.5
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 5.0e-16 90.9 85 63.5
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.9e-15 89.0 72 66.7
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-11 76.3 85 52.9
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 5.4e-10 70.9 158 34.2
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.5e-07 62.8 65 52.3


User provided reference genes

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