Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 6.7e-111 404.1 207 100.0
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.0e-107 392.5 209 97.6
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.2e-69 266.2 195 74.9
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.4e-54 215.3 195 62.6
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 5.0e-50 201.8 194 59.8
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.2e-43 180.6 188 56.4
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.2e-43 180.6 194 55.2
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.0e-39 166.0 199 51.8
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 7.8e-35 151.4 189 48.7
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.6e-34 147.9 177 50.3
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.5e-33 147.1 197 46.7
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 2.8e-32 142.9 189 48.1
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 3.6e-32 142.5 196 46.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.6e-32 142.5 189 46.0
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.0e-31 139.0 177 46.9
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.2e-30 137.5 184 46.2
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.0e-30 136.7 194 43.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.0e-30 136.7 188 45.7
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 7.5e-30 134.8 174 44.3
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 9.8e-30 134.4 228 41.7
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 9.8e-30 134.4 178 46.6
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.3e-29 134.0 183 48.1
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.3e-29 134.0 189 42.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.3e-29 134.0 198 47.5
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.2e-29 133.3 199 45.2
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.7e-29 132.5 160 53.8
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.9e-29 132.1 191 41.4
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.1e-28 131.0 184 47.8
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.1e-28 131.0 202 44.6
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.2e-28 129.4 202 44.1
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.6e-27 127.1 189 45.0
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 7.8e-27 124.8 192 41.7
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.0e-26 124.4 177 48.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.0e-26 124.4 191 44.0
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.3e-26 124.0 143 44.8
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.3e-26 124.0 183 42.6
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 2.3e-26 123.2 176 43.8
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.9e-26 122.5 155 47.1
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.9e-26 122.5 205 41.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.9e-26 122.5 183 47.5
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 5.1e-26 122.1 186 44.6
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 5.1e-26 122.1 183 44.3
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 6.6e-26 121.7 184 43.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.1e-25 120.9 191 41.9
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.1e-25 120.9 191 41.9
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.5e-25 120.6 187 46.0
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.5e-25 120.6 176 42.6
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 7.3e-25 118.2 182 38.5
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 9.5e-25 117.9 183 42.6
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.2e-24 117.5 178 41.6
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-24 117.5 161 41.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.1e-24 116.7 180 43.9
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 3.6e-24 115.9 169 42.6
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 8.1e-24 114.8 168 42.3
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 8.1e-24 114.8 153 43.8
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.1e-23 114.4 163 46.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.8e-23 113.6 136 47.1
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 1.8e-23 113.6 182 44.5
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.3e-23 113.2 154 47.4
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 2.3e-23 113.2 157 41.4
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.3e-23 113.2 188 39.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 4.0e-23 112.5 174 40.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 4.0e-23 112.5 144 39.6
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 4.0e-23 112.5 188 41.5
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 4.0e-23 112.5 205 39.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 5.2e-23 112.1 171 40.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.2e-23 112.1 190 41.1
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 5.2e-23 112.1 151 43.0
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 6.8e-23 111.7 151 43.0
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 8.9e-23 111.3 187 38.0
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.2e-22 110.9 180 41.1
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.5e-22 110.5 144 40.3
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.5e-22 110.5 177 42.9
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.5e-22 110.5 172 37.8
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.6e-22 109.8 182 41.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.4e-22 109.4 196 39.3
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 5.8e-22 108.6 147 45.6
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.8e-22 108.6 182 41.8
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 7.5e-22 108.2 180 44.4
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.5e-22 108.2 189 39.2
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.5e-22 108.2 189 39.2
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 7.5e-22 108.2 180 41.7
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.3e-21 107.5 184 41.3
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 2.2e-21 106.7 186 40.9
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-21 106.7 189 39.2
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.9e-21 106.3 184 40.8
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 4.9e-21 105.5 173 42.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 4.9e-21 105.5 178 41.0
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 4.9e-21 105.5 188 39.4
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.4e-21 105.1 188 40.4
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.4e-21 105.1 182 40.7
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 8.3e-21 104.8 181 40.9
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 1.1e-20 104.4 134 49.3
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.9e-20 103.6 180 37.2
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.9e-20 103.6 187 38.0
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.9e-20 103.6 183 36.6
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-20 103.2 182 41.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-20 103.2 182 41.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-20 103.2 182 41.2
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 4.1e-20 102.4 181 41.4
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 4.1e-20 102.4 108 53.7
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 9.2e-20 101.3 182 41.2
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.2e-19 100.9 182 40.1
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.6e-19 100.5 179 40.2
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 2.1e-19 100.1 199 36.2
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.1e-19 100.1 198 38.9
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 2.7e-19 99.8 184 38.0
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 3.5e-19 99.4 206 38.8
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.5e-19 99.4 180 38.3
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 3.5e-19 99.4 189 38.6
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 3.5e-19 99.4 122 48.4
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 6.0e-19 98.6 190 39.5
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 7.8e-19 98.2 192 39.6
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 7.8e-19 98.2 187 40.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 1.0e-18 97.8 187 39.0
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.7e-18 97.1 183 39.9
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.7e-18 97.1 190 35.3
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.0e-18 96.3 154 39.6
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.0e-18 96.3 182 35.7
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 3.9e-18 95.9 208 37.0
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 3.9e-18 95.9 163 42.9
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 3.9e-18 95.9 185 35.7
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.9e-18 95.9 205 34.6
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 5.1e-18 95.5 181 37.6
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 6.6e-18 95.1 183 38.8
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.1e-17 94.4 203 39.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 3.3e-17 92.8 209 37.8
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 4.3e-17 92.4 161 40.4
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 9.5e-17 91.3 159 38.4
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 2.1e-16 90.1 151 39.7
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.1e-16 90.1 189 37.0
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.6e-16 89.4 147 41.5
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 8.1e-16 88.2 93 53.8
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.1e-15 87.8 101 47.5
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.8e-15 87.0 213 33.8
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 4.0e-15 85.9 186 34.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 8.9e-15 84.7 158 35.4
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.2e-14 84.3 146 39.7
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 9.9e-14 81.3 178 29.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 9.9e-14 81.3 109 47.7
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.2e-13 80.1 115 44.3
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 2.2e-13 80.1 181 35.4
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 1.9e-12 77.0 182 30.2
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.2e-11 74.3 174 31.6
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.8e-11 71.6 187 29.9
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.1e-10 68.9 187 29.9
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 6.6e-10 68.6 157 33.1
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.9e-09 67.0 163 38.7
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 2.5e-09 66.6 195 32.3
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 5.6e-09 65.5 155 38.7
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 7.3e-09 65.1 179 31.3
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 1.1e-07 61.2 167 28.7
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.2e-06 57.8 180 33.9
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 5.8e-06 55.5 180 32.8


User provided reference genes

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