Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 4156.3 2103 100.0
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 3055.0 1852 85.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2888.2 2018 76.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2691.4 2060 70.9
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2549.6 2025 68.1
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2530.7 2053 67.3
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2495.3 2023 66.8
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2458.3 2163 63.6
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2433.3 2075 64.6
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2421.4 2033 65.5
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2416.7 2027 65.0
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2383.6 2025 64.5
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2357.4 2016 64.2
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2352.4 2035 63.9
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2340.8 2029 63.1
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2333.5 2022 63.9
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2330.4 2021 63.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2327.4 2019 63.8
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2323.5 1991 63.0
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2300.4 2026 63.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2297.3 2023 63.2
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2295.0 1867 66.6
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2294.2 2057 62.3
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2292.7 2022 63.2
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2286.9 2056 61.4
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2286.1 2056 61.2
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2282.7 2020 62.1
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2276.1 2005 63.2
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2274.6 2026 61.7
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2273.0 2022 61.4
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2270.0 2029 62.5
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2266.1 2038 61.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2261.5 2038 61.8
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2259.2 1690 70.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2257.6 2033 61.8
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2255.3 2040 61.8
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2253.8 2030 61.8
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2252.2 2016 61.2
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2251.1 1992 62.7
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2249.9 2023 61.8
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2246.1 2094 61.2
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2235.3 2023 62.0
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2231.8 2029 61.2
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2231.1 2035 61.1
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2230.3 2096 60.3
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2228.8 2028 61.6
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2226.4 2147 58.9
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2219.5 2040 61.3
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2207.9 2027 60.2
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2205.3 2018 61.6
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2201.4 2012 60.7
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2196.4 2026 60.4
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2194.5 2151 58.0
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2187.9 2033 59.8
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2187.9 2032 60.1
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2176.0 2035 60.0
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2167.1 1999 60.6
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2164.0 2045 59.8
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2163.3 2018 59.8
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2159.4 2013 60.9
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2152.9 2080 58.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2136.7 2022 58.2
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2123.2 2004 59.7
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2119.7 1986 58.2
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2102.0 2041 58.3
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2085.1 2019 57.9
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2067.0 1921 61.3
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2046.6 2174 54.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2036.5 2041 56.7
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2006.5 2028 56.3
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2003.8 2014 56.5
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2001.1 2025 56.2
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2000.7 2016 56.2
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1997.2 2010 56.5
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1994.9 1775 61.9
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1992.2 2028 57.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1991.9 2019 55.6
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1934.1 2030 54.8
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1930.2 2019 54.7
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1925.6 2027 54.6
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1925.6 2039 54.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1922.5 2025 54.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1916.0 2048 54.2
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1914.4 2054 54.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1912.1 2011 54.2
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1912.1 2021 54.1
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1907.9 1749 60.8
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1903.6 2056 53.8
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1825.8 1680 59.2
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1781.5 2059 51.1
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1772.3 2017 51.9
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1753.8 1730 58.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1723.4 1385 69.2
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1691.0 1509 62.5
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1663.7 1430 64.3
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1557.3 2036 46.7
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1442.9 1248 62.0
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1424.8 2047 44.8
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1320.4 1288 58.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1315.4 1195 61.6
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1314.3 1893 43.4
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1245.0 1204 60.3
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1239.6 1640 45.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1193.3 1434 49.6
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.5e-306 1056.6 796 72.9
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 3.4e-303 1046.2 804 70.8
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 5.1e-291 1005.7 800 69.6
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.7e-268 930.2 1164 47.3
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.6e-268 929.5 1066 52.5
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.7e-266 922.5 993 53.2
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 3.1e-264 916.8 854 58.7
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 5.5e-253 879.4 2164 32.7
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.7e-233 814.7 2161 31.2
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-189 668.7 1033 42.5
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.6e-188 665.2 1997 31.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 2.3e-187 661.4 641 58.0
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.1e-168 599.4 1973 28.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.4e-168 599.0 434 70.7
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 4.9e-161 573.9 599 52.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.8e-156 558.1 1632 30.0
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.3e-153 549.3 547 55.6
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 4.1e-147 527.7 331 80.7
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.7e-135 488.4 482 57.7
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.3e-134 485.3 318 81.8
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.1e-115 423.3 785 38.6
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-107 396.7 535 45.8
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.4e-99 369.8 219 84.9
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.8e-94 352.8 365 52.9
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.0e-94 352.1 356 53.9
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 3.7e-92 345.1 457 50.5
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.0e-89 337.0 218 75.7
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.2e-82 313.5 303 60.4
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 3.9e-81 308.5 381 49.1
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.8e-79 302.4 166 88.6
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 5.8e-77 294.7 306 53.6
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.1e-70 273.9 251 63.3
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-70 273.1 1107 27.3
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 5.2e-70 271.6 201 73.1
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 3.8e-68 265.4 157 82.2
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.1e-67 261.9 160 81.2
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 5.4e-67 261.5 299 52.5
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 2.2e-60 239.6 272 51.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 8.4e-60 237.7 437 39.8
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 6.0e-58 231.5 195 66.2
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.2e-55 221.5 172 65.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-51 210.3 238 52.9
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.5e-48 200.3 320 39.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-47 196.4 126 72.2
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 8.4e-44 184.5 598 28.8
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.5e-40 172.9 375 34.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 5.3e-38 165.2 125 76.0
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 4.3e-32 145.6 90 77.8
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.3e-31 144.1 255 34.5
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 3.6e-26 125.9 109 61.5
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.5e-24 120.6 75 72.0
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.1e-22 114.4 126 53.2
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 2.7e-18 99.8 115 53.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 2.7e-18 99.8 115 53.0
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.7e-18 99.8 160 45.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 8.8e-17 94.7 207 38.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 8.8e-17 94.7 115 50.4
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.0e-16 93.6 67 67.2
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-15 90.5 131 44.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.7e-15 89.4 57 71.9
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 8.2e-15 88.2 143 43.4
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 6.5e-12 78.6 148 38.5
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.4e-11 77.4 44 72.7
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.4e-11 77.4 44 72.7
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 6.1e-10 72.0 166 35.5
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 3.7e-07 62.8 67 49.3
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 4.8e-07 62.4 78 47.4
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 4.1e-06 59.3 36 75.0


User provided reference genes

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