Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 0.0e+00 1431.0 698 100.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 0.0e+00 1199.1 685 86.3
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 0.0e+00 1171.4 760 77.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.3e-311 1071.2 726 73.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 7.8e-289 996.9 731 66.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.3e-280 969.5 676 68.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.0e-277 958.0 730 63.4
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.0e-277 958.0 691 65.4
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 3.4e-276 954.9 710 65.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.1e-274 949.9 717 63.6
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 6.0e-273 944.1 713 63.3
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.4e-269 932.2 739 61.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.0e-268 929.1 716 63.0
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.9e-268 926.8 703 64.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 8.4e-267 923.7 725 61.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.4e-266 922.9 723 61.4
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-266 921.8 663 65.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.2e-266 921.4 663 65.9
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.1e-266 920.6 696 63.1
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.3e-266 920.2 722 62.3
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.3e-266 920.2 687 65.1
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.2e-265 919.8 687 65.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.7e-265 918.7 724 62.2
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 6.0e-265 917.5 663 65.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 6.0e-265 917.5 708 63.4
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.0e-265 917.5 708 63.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.0e-264 916.8 705 63.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.3e-264 915.6 722 61.6
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 8.7e-264 913.7 734 61.2
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.5e-263 912.9 727 61.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 5.6e-263 911.0 598 71.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.3e-262 909.8 711 62.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.8e-261 906.0 718 62.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.1e-261 905.2 725 61.2
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.0e-261 904.8 727 60.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.9e-261 904.0 659 66.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.2e-259 899.0 669 63.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.9e-258 896.0 724 60.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 5.5e-258 894.4 696 61.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.5e-257 891.7 713 61.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.0e-256 890.2 723 60.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.7e-256 887.1 722 60.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 8.7e-256 887.1 707 61.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-255 886.7 723 60.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.5e-255 886.3 706 60.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.9e-255 885.9 730 59.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.5e-255 885.6 668 62.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.3e-255 885.2 707 60.5
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.4e-255 884.0 733 60.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 2.8e-254 882.1 715 61.0
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.1e-253 880.2 669 62.9
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.4e-253 879.8 680 62.8
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.1e-253 878.6 758 58.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.9e-253 877.5 742 59.4
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-252 876.7 712 59.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-252 876.7 707 59.8
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-252 876.7 688 61.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.9e-250 869.4 714 60.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 4.6e-249 864.8 710 61.0
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.3e-248 862.4 710 59.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.3e-248 862.4 726 58.7
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.3e-247 858.2 680 61.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.7e-246 855.1 676 60.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.8e-246 854.7 669 61.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 4.8e-246 854.7 720 59.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.1e-245 853.6 669 62.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.4e-244 848.6 722 58.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.9e-243 845.5 698 58.5
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 3.8e-243 845.1 675 60.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.1e-242 843.6 733 55.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 4.7e-241 838.2 733 55.4
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 6.1e-241 837.8 674 60.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-240 835.9 628 63.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 6.7e-240 834.3 672 60.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.0e-237 824.3 591 67.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.9e-234 816.2 677 58.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 6.7e-232 807.7 734 54.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 8.8e-232 807.4 882 49.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.3e-230 803.5 590 65.6
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-230 803.1 737 55.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 4.8e-230 801.6 683 57.5
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.2e-230 800.8 683 56.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.8e-229 799.7 668 55.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 9.1e-229 797.3 679 58.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.0e-227 793.9 680 55.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.5e-227 790.8 668 55.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.5e-226 789.3 670 54.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.2e-226 788.9 695 53.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 5.5e-226 788.1 671 55.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.2e-226 787.7 618 61.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.7e-225 785.8 528 71.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.3e-224 782.7 670 54.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 6.8e-224 781.2 674 54.6
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 8.8e-224 780.8 681 56.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-222 776.2 673 54.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-221 773.5 669 54.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-221 773.1 669 54.6
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.8e-221 773.1 669 54.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 4.1e-221 771.9 713 53.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.5e-219 764.2 667 54.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 7.2e-218 761.1 715 53.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.0e-217 757.7 716 52.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.3e-216 756.1 723 51.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.5e-215 753.4 680 56.0
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.0e-215 753.1 686 52.9
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.5e-215 751.1 685 54.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 9.8e-215 750.7 671 56.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-214 750.4 714 51.7
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.7e-214 750.0 715 52.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.7e-214 748.8 732 51.5
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.3e-214 747.7 668 52.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 8.3e-214 747.7 666 56.6
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.1e-213 745.3 682 52.6
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.5e-212 741.9 666 57.1
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.5e-210 734.2 663 56.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-208 730.3 730 51.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.3e-206 721.5 776 49.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 5.4e-205 718.4 667 55.9
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.7e-204 716.1 757 47.8
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 5.9e-204 714.9 673 52.0
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-200 703.7 685 52.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.1e-200 702.6 677 54.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.1e-200 702.6 634 54.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-196 689.9 607 55.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.9e-187 659.1 685 50.7
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.1e-184 649.4 743 47.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.8e-184 648.3 682 47.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.2e-183 647.5 522 59.6
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.4e-181 638.6 711 48.9
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.1e-180 636.7 564 56.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.3e-174 617.5 673 48.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.5e-146 523.5 539 49.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 4.8e-137 492.7 335 66.3
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 4.6e-132 476.1 425 52.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.2e-125 453.4 388 57.0
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-116 424.9 386 52.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-108 398.3 306 59.8
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 4.4e-106 389.8 403 50.9
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 5.9e-103 379.4 319 54.5
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.9e-102 377.1 450 44.0
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-99 368.2 214 79.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.7e-95 352.4 586 35.8
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.2e-91 339.7 313 50.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.2e-89 334.3 544 35.3
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.6e-86 322.8 327 52.0
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.1e-84 317.8 569 34.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 7.1e-64 249.6 202 60.4
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-59 235.7 156 69.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 5.4e-56 223.4 243 50.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.7e-55 221.1 146 69.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-51 209.1 212 50.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-46 191.0 223 45.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-45 188.7 127 65.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.3e-45 187.2 377 31.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.3e-43 180.3 127 62.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.0e-42 178.3 212 47.6
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.5e-42 177.2 180 51.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.1e-39 168.3 261 41.0
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-36 159.1 99 70.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 9.3e-32 142.9 240 35.8
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-29 134.8 134 48.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.1e-28 131.7 234 32.9
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.7e-21 106.3 118 43.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-18 99.0 225 32.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.6e-18 98.2 144 37.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.2e-17 95.1 59 67.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.5e-17 93.2 79 57.0
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-15 89.0 201 30.3
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.3e-13 81.3 75 57.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.8e-12 78.2 48 66.7
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.8e-12 78.2 48 66.7


User provided reference genes

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