Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0147000 Rhododendron simsii HOM05D003650 ORTHO05D004213 5.2e-97 357.8 195 100.0
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 3.3e-35 152.5 160 57.5
Rhsim07G0058200 Rhododendron simsii HOM05D003650 ORTHO05D004213 4.8e-26 122.1 69 85.5
vmacro13691 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 3.1e-25 119.4 127 55.1
CSS0046501 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 1.3e-23 114.0 121 53.7
Rhsim01G0208000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.3e-23 114.0 116 69.8
CSS0035654 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 1.7e-23 113.6 121 54.5
Lalb_Chr20g0110481 Lupinus albus HOM05D003650 ORTHO05D004213 4.9e-23 112.1 128 52.3
FAN06G0077 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.1e-22 110.9 128 51.6
COL.COLO4_28278 Corchorus olitorius HOM05D003650 ORTHO05D004213 1.4e-22 110.5 127 52.0
FvH4_7g01460 Fragaria vesca HOM05D003650 ORTHO05D004213 1.4e-22 110.5 128 51.6
Manes.09G021900 Manihot esculenta HOM05D003650 ORTHO05D004213 1.4e-22 110.5 127 51.2
CANSAT80G0970 Cannabis sativa HOM05D003650 ORTHO05D004213 1.9e-22 110.2 127 51.2
CANSAT80G1317 Cannabis sativa HOM05D003650 ORTHO05D004213 1.9e-22 110.2 127 51.2
Oeu027406.1 Olea europaea HOM05D003650 ORTHO05D004213 1.9e-22 110.2 121 52.9
FvH4_6g23790 Fragaria vesca HOM05D003650 ORTHO05D004213 2.4e-22 109.8 122 54.9
FAN02G1020 Fragaria x ananassa HOM05D003650 ORTHO05D004213 2.4e-22 109.8 122 54.9
FAN09G0940 Fragaria x ananassa HOM05D003650 ORTHO05D004213 2.4e-22 109.8 122 54.9
Gohir.D09G118400 Gossypium hirsutum HOM05D003650 ORTHO05D004213 2.4e-22 109.8 127 52.8
Gorai.006G136700 Gossypium raimondii HOM05D003650 ORTHO05D004213 2.4e-22 109.8 127 52.8
Duzib093G1511 Durio zibethinus HOM05D003650 ORTHO05D004213 3.2e-22 109.4 127 52.8
FAN14G5543 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.2e-22 109.4 122 54.9
Gohir.A09G122300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.2e-22 109.4 127 52.8
Nitab4.5_0000707g0190 Nicotiana tabacum HOM05D003650 ORTHO05D004213 3.2e-22 109.4 127 51.2
Peaxi162Scf00694g00117 Petunia axillaris HOM05D003650 ORTHO05D004213 3.2e-22 109.4 128 50.8
Dinv12480 Davidia involucrata HOM05D003650 ORTHO05D004213 4.2e-22 109.0 127 51.2
TWI77G0711 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 4.2e-22 109.0 127 52.8
TAR633G1518 Trochodendron aralioides HOM05D003650 ORTHO05D004213 4.2e-22 109.0 127 52.8
Duzib205G0897 Durio zibethinus HOM05D003650 ORTHO05D004213 5.4e-22 108.6 127 52.8
Gorai.006G136600 Gossypium raimondii HOM05D003650 ORTHO05D004213 5.4e-22 108.6 127 52.0
Prupe.2G020200 Prunus persica HOM05D003650 ORTHO05D004213 5.4e-22 108.6 128 50.8
Hma1.2p1_2002F.1_g310720 Hydrangea macrophylla HOM05D003650 ORTHO05D004213 7.1e-22 108.2 127 51.2
Prupe.7G061300 Prunus persica HOM05D003650 ORTHO05D004213 7.1e-22 108.2 127 51.2
GSVIVG01033278001 Vitis vinifera HOM05D003650 ORTHO05D004213 7.1e-22 108.2 127 52.0
Gohir.A09G122200 Gossypium hirsutum HOM05D003650 ORTHO05D004213 9.3e-22 107.8 127 54.3
MD14G1071900 Malus domestica HOM05D003650 ORTHO05D004213 9.3e-22 107.8 127 51.2
RcHm_v2.0_Chr3g0482321 Rosa chinensis HOM05D003650 ORTHO05D004213 9.3e-22 107.8 128 52.3
Sed0014274 Sechium edule HOM05D003650 ORTHO05D004213 9.3e-22 107.8 127 52.0
TWI74G1194 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 9.3e-22 107.8 127 52.0
Duzib128G1026 Durio zibethinus HOM05D003650 ORTHO05D004213 1.2e-21 107.5 127 51.2
FAN05G4085 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.2e-21 107.5 122 54.1
Manes.08G050700 Manihot esculenta HOM05D003650 ORTHO05D004213 1.2e-21 107.5 127 51.2
Potri.006G051000 Populus trichocarpa HOM05D003650 ORTHO05D004213 1.2e-21 107.5 127 51.2
RcHm_v2.0_Chr1g0317301 Rosa chinensis HOM05D003650 ORTHO05D004213 1.2e-21 107.5 128 50.0
CAN.G676.68 Capsicum annuum HOM05D003650 ORTHO05D004213 1.6e-21 107.1 129 51.2
MD12G1073600 Malus domestica HOM05D003650 ORTHO05D004213 1.6e-21 107.1 127 51.2
Nitab4.5_0008441g0020 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.6e-21 107.1 127 51.2
CSS0010444 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 2.1e-21 106.7 127 51.2
Cc02_g29000 Coffea canephora HOM05D003650 ORTHO05D004213 2.1e-21 106.7 121 52.1
Lj5g0024914 Lotus japonicus HOM05D003650 ORTHO05D004213 2.1e-21 106.7 127 50.4
Potri.016G055700 Populus trichocarpa HOM05D003650 ORTHO05D004213 2.1e-21 106.7 127 51.2
Thecc.05G153700 Theobroma cacao HOM05D003650 ORTHO05D004213 2.1e-21 106.7 127 52.0
TAR636G3054 Trochodendron aralioides HOM05D003650 ORTHO05D004213 2.1e-21 106.7 127 51.2
CAN.G219.62 Capsicum annuum HOM05D003650 ORTHO05D004213 2.7e-21 106.3 128 50.8
ClCG10G016580 Citrullus lanatus HOM05D003650 ORTHO05D004213 2.7e-21 106.3 127 50.4
Haze_19859 Corylus avellana HOM05D003650 ORTHO05D004213 2.7e-21 106.3 127 52.0
PSO384G3418 Papaver somniferum HOM05D003650 ORTHO05D004213 2.7e-21 106.3 127 50.4
Sopen01g034570 Solanum pennellii HOM05D003650 ORTHO05D004213 2.7e-21 106.3 128 50.8
MELO3C009717.2 Cucumis melo HOM05D003650 ORTHO05D004213 3.5e-21 105.9 127 51.2
ECA248G2213 Erigeron canadensis HOM05D003650 ORTHO05D004213 3.5e-21 105.9 127 50.4
FAN10G4002 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.5e-21 105.9 131 51.1
Gohir.D09G118300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.5e-21 105.9 69 75.4
Lalb_Chr06g0173451 Lupinus albus HOM05D003650 ORTHO05D004213 3.5e-21 105.9 145 47.6
PSO339G5560 Papaver somniferum HOM05D003650 ORTHO05D004213 3.5e-21 105.9 127 50.4
Peaxi162Scf00130g00016 Petunia axillaris HOM05D003650 ORTHO05D004213 3.5e-21 105.9 69 75.4
Sabra06G0035700 Salix brachista HOM05D003650 ORTHO05D004213 3.5e-21 105.9 127 50.4
CiPaw.10G033200 Carya illinoinensis HOM05D003650 ORTHO05D004213 4.6e-21 105.5 127 51.2
CsaV3_3G039750 Cucumis sativus L. HOM05D003650 ORTHO05D004213 4.6e-21 105.5 127 51.2
Nitab4.5_0005195g0070 Nicotiana tabacum HOM05D003650 ORTHO05D004213 4.6e-21 105.5 69 73.9
Actinidia09330 Actinidia chinensis HOM05D003650 ORTHO05D004213 6.0e-21 105.1 127 50.4
Cpa.g.sc92.50 Carica papaya HOM05D003650 ORTHO05D004213 6.0e-21 105.1 127 49.6
Ca_26017_v3 Cicer arietinum L. HOM05D003650 ORTHO05D004213 6.0e-21 105.1 127 51.2
ECA247G3671 Erigeron canadensis HOM05D003650 ORTHO05D004213 6.0e-21 105.1 127 50.4
Nitab4.5_0010636g0040 Nicotiana tabacum HOM05D003650 ORTHO05D004213 6.0e-21 105.1 132 48.5
vmacro07855 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 6.0e-21 105.1 127 50.4
CANSAT80G2225 Cannabis sativa HOM05D003650 ORTHO05D004213 7.9e-21 104.8 130 49.2
CiPaw.09G038100 Carya illinoinensis HOM05D003650 ORTHO05D004213 7.9e-21 104.8 127 49.6
Cc06_g17090 Coffea canephora HOM05D003650 ORTHO05D004213 7.9e-21 104.8 127 49.6
Eucgr.A02349 Eucalyptus grandis HOM05D003650 ORTHO05D004213 7.9e-21 104.8 127 52.0
Psat6g120000 Pisum sativum HOM05D003650 ORTHO05D004213 7.9e-21 104.8 145 47.6
Sc13g0001770 Simmondsia chinensis HOM05D003650 ORTHO05D004213 7.9e-21 104.8 127 49.6
Atru.chr1.1095 Acer truncatum HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 51.2
arahy.Tifrunner.gnm1.ann1.MS35EQ Arachis hypogaea HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 49.6
arahy.Tifrunner.gnm1.ann1.YDMB1U Arachis hypogaea HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 49.6
CDE11G0464 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 48.8
AUR62024446 Chenopodium quinoa HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 52.0
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 52.0
Dinv09321 Davidia involucrata HOM05D003650 ORTHO05D004213 1.0e-20 104.4 69 73.9
Glyma.10G097600 Glycine max HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 49.6
HanXRQChr10g0288771 Helianthus annuus HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 50.4
Rhsim03G0021200 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.0e-20 104.4 127 50.4
PGSC0003DMG400006853 Solanum tuberosum HOM05D003650 ORTHO05D004213 1.0e-20 104.4 128 49.2
CDE11G0987 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 1.3e-20 104.0 69 71.0
Dinv39600 Davidia involucrata HOM05D003650 ORTHO05D004213 1.3e-20 104.0 69 73.9
Sabra16G0058400 Salix brachista HOM05D003650 ORTHO05D004213 1.3e-20 104.0 127 49.6
Rhsim03G0022300 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.8e-20 103.6 127 49.6
Solyc01g087600.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 1.8e-20 103.6 128 49.2
Actinidia39226 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.3e-20 103.2 127 48.8
Nn2g15253 Nelumbo nucifera HOM05D003650 ORTHO05D004213 2.3e-20 103.2 127 48.8
QL07p000311 Quercus lobata HOM05D003650 ORTHO05D004213 2.3e-20 103.2 127 50.4
Solyc04g015740.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 2.3e-20 103.2 69 72.5
Sopen04g007820 Solanum pennellii HOM05D003650 ORTHO05D004213 2.3e-20 103.2 69 72.5
PGSC0003DMG400027249 Solanum tuberosum HOM05D003650 ORTHO05D004213 2.3e-20 103.2 69 72.5
THA.LOC104802108 Tarenaya hassleriana HOM05D003650 ORTHO05D004213 2.3e-20 103.2 127 48.0
BcaNung02835 Brassica carinata HOM05D003650 ORTHO05D004213 3.0e-20 102.8 122 51.6
TPR.G10642 Trifolium pratense HOM05D003650 ORTHO05D004213 3.0e-20 102.8 127 50.4
EL10Ac3g07088 Beta vulgaris HOM05D003650 ORTHO05D004213 3.9e-20 102.4 127 49.6
Migut.J01760 Erythranthe guttata HOM05D003650 ORTHO05D004213 3.9e-20 102.4 127 48.8
MD07G1018300 Malus domestica HOM05D003650 ORTHO05D004213 3.9e-20 102.4 128 50.0
Phvul.007G252800 Phaseolus vulgaris HOM05D003650 ORTHO05D004213 3.9e-20 102.4 127 48.8
AT3G57420 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 5.1e-20 102.1 127 48.0
Lsat_1_v5_gn_9_29041 Lactuca sativa HOM05D003650 ORTHO05D004213 5.1e-20 102.1 127 50.4
Medtr0121s0010 Medicago truncatula HOM05D003650 ORTHO05D004213 5.1e-20 102.1 127 48.8
Oeu023110.1 Olea europaea HOM05D003650 ORTHO05D004213 5.1e-20 102.1 127 50.4
SalBow6G5443 Salvia bowleyana HOM05D003650 ORTHO05D004213 5.1e-20 102.1 69 71.0
SGA_v2.0_scaffold69G23114 Striga asiatica HOM05D003650 ORTHO05D004213 5.1e-20 102.1 127 48.0
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 6.7e-20 101.7 122 50.0
CARHR136860 Cardamine hirsuta HOM05D003650 ORTHO05D004213 6.7e-20 101.7 127 47.2
Sp4g24040 Schrenkiella parvula HOM05D003650 ORTHO05D004213 6.7e-20 101.7 127 48.0
A05p02520 Brassica napus HOM05D003650 ORTHO05D004213 8.7e-20 101.3 122 49.2
BraA05t19245Z Brassica rapa HOM05D003650 ORTHO05D004213 8.7e-20 101.3 122 49.2
PGR004G2044 Punica granatum HOM05D003650 ORTHO05D004213 8.7e-20 101.3 127 48.8
Hund19149 Selenicereus undatus HOM05D003650 ORTHO05D004213 8.7e-20 101.3 127 49.6
AL5G38950 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.1e-19 100.9 127 47.2
Lj2A385G21 Lonicera japonica HOM05D003650 ORTHO05D004213 1.1e-19 100.9 127 49.6
Aqoxy2G00151 Aquilegia oxysepala HOM05D003650 ORTHO05D004213 1.5e-19 100.5 127 48.8
AL4G40080 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.5e-19 100.5 129 48.8
AT2G41770 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 1.5e-19 100.5 127 47.2
BcaNung06246 Brassica carinata HOM05D003650 ORTHO05D004213 1.5e-19 100.5 127 46.5
C04p02980 Brassica napus HOM05D003650 ORTHO05D004213 1.5e-19 100.5 122 49.2
Ciclev10004391m.g Citrus clementina HOM05D003650 ORTHO05D004213 1.5e-19 100.5 127 48.0
Ah.13g076450 Amaranthus hybridus HOM05D003650 ORTHO05D004213 1.9e-19 100.1 127 48.8
ClCG09G003920 Citrullus lanatus HOM05D003650 ORTHO05D004213 2.5e-19 99.8 124 49.2
Oeu008162.1 Olea europaea HOM05D003650 ORTHO05D004213 2.5e-19 99.8 127 49.6
Ah.04g151780 Amaranthus hybridus HOM05D003650 ORTHO05D004213 3.3e-19 99.4 127 48.0
Carub.0004s2405 Capsella rubella HOM05D003650 ORTHO05D004213 3.3e-19 99.4 127 47.2
Rhsim04G0142400 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.3e-19 99.4 86 77.9
VMungo0720G2955 Vigna mungo HOM05D003650 ORTHO05D004213 3.3e-19 99.4 127 47.2
Thhalv10016286m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 4.3e-19 99.0 127 46.5
ATR0626G026 Amborella trichopoda HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 47.2
A03p23420 Brassica napus HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 45.7
C03p27940 Brassica napus HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 45.7
BolC3t15166H Brassica oleracea HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 45.7
BraA03t11559Z Brassica rapa HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 45.7
HanXRQChr01g0008741 Helianthus annuus HOM05D003650 ORTHO05D004213 5.6e-19 98.6 120 50.0
Sp5g05180 Schrenkiella parvula HOM05D003650 ORTHO05D004213 5.6e-19 98.6 127 46.5
Carub.0005s2426 Capsella rubella HOM05D003650 ORTHO05D004213 7.4e-19 98.2 127 45.7
CDE07G0124 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 7.4e-19 98.2 127 48.0
Thhalv10005801m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 7.4e-19 98.2 127 45.7
Sed0006713 Sechium edule HOM05D003650 ORTHO05D004213 7.4e-19 98.2 124 49.2
Glyma.02G184100 Glycine max HOM05D003650 ORTHO05D004213 9.6e-19 97.8 127 48.0
Lsat_1_v5_gn_5_161461 Lactuca sativa HOM05D003650 ORTHO05D004213 9.6e-19 97.8 126 46.8
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 9.6e-19 97.8 118 48.3
MSTRG.6431 Avicennia marina HOM05D003650 ORTHO05D004213 1.6e-18 97.1 127 48.0
CARHR167620 Cardamine hirsuta HOM05D003650 ORTHO05D004213 2.8e-18 96.3 127 45.7
CsaV3_7G030820 Cucumis sativus L. HOM05D003650 ORTHO05D004213 2.8e-18 96.3 124 47.6
Aa31LG1G23780 Aethionema arabicum HOM05D003650 ORTHO05D004213 3.7e-18 95.9 127 45.7
Nn7g36273 Nelumbo nucifera HOM05D003650 ORTHO05D004213 3.7e-18 95.9 76 67.1
MELO3C023570.2 Cucumis melo HOM05D003650 ORTHO05D004213 4.8e-18 95.5 124 46.8
Lju124C41T4 Lonicera japonica HOM05D003650 ORTHO05D004213 4.8e-18 95.5 120 51.7
DCAR_013601 Daucus carota HOM05D003650 ORTHO05D004213 6.2e-18 95.1 127 45.7
unitig_26.g9047 Utricularia gibba HOM05D003650 ORTHO05D004213 6.2e-18 95.1 91 54.9
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 7.6e-16 88.2 88 55.7
SEGI_32089 Sequoiadendron giganteum HOM05D003650 ORTHO05D004213 1.7e-15 87.0 63 66.7
Mapoly0004s0304 Marchantia polymorpha HOM05D003650 ORTHO05D004213 2.2e-15 86.7 120 43.3
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.8e-15 85.9 92 51.1
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.8e-15 85.9 100 47.0
RhsimUnG0178400 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.8e-15 85.9 100 47.0
HPP92_010728 Vanilla planifolia HOM05D003650 ORTHO05D004213 3.8e-15 85.9 90 50.0
Zm00001eb287230 Zea mays HOM05D003650 ORTHO05D004213 3.8e-15 85.9 128 44.5
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.4e-15 85.1 100 47.0
Rhsim06G0101500 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.4e-15 85.1 100 47.0
Os07g0656400 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 5.5e-14 82.0 70 60.0
Rhsim03G0019600 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.5e-14 82.0 100 46.0
Rhsim01G0090200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-13 80.9 100 44.0
Rhsim01G0048200 Rhododendron simsii HOM05D000045 ORTHO05D016986 1.6e-13 80.5 100 49.0
Sed0014161 Sechium edule HOM05D003650 ORTHO05D004213 2.7e-13 79.7 68 61.8
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 3.5e-13 79.3 100 44.0
Zm00001eb329540 Zea mays HOM05D003650 ORTHO05D004213 1.0e-12 77.8 70 57.1
SMO165G0114 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 1.6e-10 70.5 63 52.4
Rhsim02G0176700 Rhododendron simsii HOM05D000045 ORTHO05D016986 3.7e-10 69.3 103 40.8
Pp3c14_20380 Physcomitrium patens HOM05D003650 ORTHO05D004213 8.2e-10 68.2 123 37.4
Pp3c17_18550 Physcomitrium patens HOM05D003650 ORTHO05D004213 2.4e-09 66.6 63 50.8
Rhsim02G0166500 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.1e-09 66.2 92 46.7
SMO329G0078 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 6.9e-09 65.1 63 49.2
Rhsim08G0130100 Rhododendron simsii HOM05D000187 ORTHO05D000230 1.2e-08 64.3 80 48.8
AL4G39860 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.0e-07 61.2 93 41.9


User provided reference genes

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