Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0146100 Rhododendron simsii HOM05D007675 ORTHO05D009699 3.5e-223 778.1 422 100.0
Rhsim07G0245100 Rhododendron simsii HOM05D007675 ORTHO05D009699 1.1e-62 245.0 421 42.3
Actinidia12984 Actinidia chinensis HOM05D007675 ORTHO05D009699 8.9e-54 215.3 205 60.5
Rhsim11G0171900 Rhododendron simsii HOM05D007675 ORTHO05D009699 8.4e-52 208.8 370 40.3
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 2.5e-48 197.2 208 53.4
Sc14g0001640 Simmondsia chinensis HOM05D007675 ORTHO05D009699 2.9e-44 183.7 302 40.4
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 3.2e-43 180.3 249 44.6
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 1.3e-41 174.9 212 49.1
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 8.7e-41 172.2 273 42.1
ECA246G0465 Erigeron canadensis HOM05D007675 ORTHO05D009699 3.3e-40 170.2 205 48.3
Lj5P203T17 Lonicera japonica HOM05D007675 ORTHO05D009699 3.3e-40 170.2 204 51.5
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 5.6e-40 169.5 387 32.6
Lsat_1_v5_gn_1_38361 Lactuca sativa HOM05D007675 ORTHO05D009699 1.3e-39 168.3 204 47.5
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 1.6e-39 167.9 204 47.5
MD10G1084800 Malus domestica HOM05D007675 ORTHO05D009699 2.1e-39 167.5 208 43.8
HanXRQChr04g0128461 Helianthus annuus HOM05D007675 ORTHO05D009699 6.2e-39 166.0 204 46.6
Cc02_g18070 Coffea canephora HOM05D007675 ORTHO05D009699 1.4e-38 164.9 210 46.2
Eucgr.I01233 Eucalyptus grandis HOM05D007675 ORTHO05D009699 3.1e-38 163.7 412 30.1
BcaC06g36105 Brassica carinata HOM05D007675 ORTHO05D009699 6.9e-38 162.5 245 42.9
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 1.2e-37 161.8 202 48.0
RcHm_v2.0_Chr6g0245191 Rosa chinensis HOM05D007675 ORTHO05D009699 4.5e-37 159.8 210 43.8
Ciclev10028281m.g Citrus clementina HOM05D007675 ORTHO05D009699 1.4e-35 154.8 208 45.2
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 1.4e-35 154.8 205 46.8
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 1.9e-35 154.5 205 46.8
Potri.004G149400 Populus trichocarpa HOM05D007675 ORTHO05D009699 2.4e-35 154.1 242 40.9
PGR042G1965 Punica granatum HOM05D007675 ORTHO05D009699 3.2e-35 153.7 204 42.6
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 7.1e-35 152.5 425 29.6
CiPaw.05G059700 Carya illinoinensis HOM05D007675 ORTHO05D009699 9.3e-35 152.1 229 41.5
FvH4_2g02001 Fragaria vesca HOM05D007675 ORTHO05D009699 9.3e-35 152.1 201 44.3
EL10Ac9g21777 Beta vulgaris HOM05D007675 ORTHO05D009699 2.1e-34 151.0 212 44.3
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 2.7e-34 150.6 210 43.8
FAN15G2036 Fragaria x ananassa HOM05D007675 ORTHO05D009699 6.0e-34 149.4 205 42.9
MBI04_g06224_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D002477 1.0e-33 148.7 218 42.2
AT2G15980 Arabidopsis thaliana HOM05D007675 ORTHO05D009699 1.3e-33 148.3 211 43.1
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 1.8e-33 147.9 213 42.7
CARHR106300 Cardamine hirsuta HOM05D007675 ORTHO05D009699 2.3e-33 147.5 199 44.7
Sabra04G0099300 Salix brachista HOM05D007675 ORTHO05D009699 5.1e-33 146.4 239 40.6
Aa31LG8G13490 Aethionema arabicum HOM05D007675 ORTHO05D009699 6.7e-33 146.0 212 42.0
AUR62011385 Chenopodium quinoa HOM05D007675 ORTHO05D009699 6.7e-33 146.0 290 37.6
Nn5g29449 Nelumbo nucifera HOM05D007675 ORTHO05D009699 6.7e-33 146.0 213 41.8
Cpa.g.sc62.93 Carica papaya HOM05D007675 ORTHO05D009699 1.1e-32 145.2 277 37.5
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 1.1e-32 145.2 209 41.6
TWI79G0081 Tripterygium wilfordii HOM05D007675 ORTHO05D009699 1.1e-32 145.2 215 42.3
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 3.3e-32 143.7 208 42.8
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 3.3e-32 143.7 205 40.5
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 3.3e-32 143.7 211 42.7
Lj3g0001256 Lotus japonicus HOM05D007675 ORTHO05D009699 1.3e-31 141.7 213 44.1
THA.LOC104804364 Tarenaya hassleriana HOM05D007675 ORTHO05D009699 2.1e-31 141.0 213 40.4
BolC7t41197H Brassica oleracea HOM05D007675 ORTHO05D009699 2.8e-31 140.6 246 39.0
C07p07790 Brassica napus HOM05D007675 ORTHO05D009699 3.7e-31 140.2 246 39.0
MELO3C021959.2 Cucumis melo HOM05D007675 ORTHO05D009699 6.2e-31 139.4 212 42.9
Ah.01g019740 Amaranthus hybridus HOM05D007675 ORTHO05D009699 8.1e-31 139.0 217 41.0
Atru.chr5.2909 Acer truncatum HOM05D007675 ORTHO05D009699 1.1e-30 138.7 210 42.9
Psat7g206160 Pisum sativum HOM05D007675 ORTHO05D009699 1.8e-30 137.9 385 30.4
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 3.1e-30 137.1 211 42.2
CsaV3_2G014520 Cucumis sativus L. HOM05D007675 ORTHO05D009699 4.0e-30 136.7 212 42.0
CSS0027680 Camellia sinensis var. sinensis HOM05D007675 ORTHO05D009699 9.0e-30 135.6 283 37.1
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 1.5e-29 134.8 211 42.2
BraA07t28274Z Brassica rapa HOM05D007675 ORTHO05D009699 2.0e-29 134.4 246 37.4
ClCG09G017910 Citrullus lanatus HOM05D007675 ORTHO05D009699 2.0e-29 134.4 212 41.5
Glyma.11G122100 Glycine max HOM05D007675 ORTHO05D009699 2.0e-29 134.4 208 42.3
Solyc10g051010.3 Solanum lycopersicum HOM05D007675 ORTHO05D009699 2.0e-29 134.4 204 41.7
Aqoxy5G01397 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 3.4e-29 133.7 207 41.5
Aqoxy5G01741 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 3.4e-29 133.7 211 41.2
arahy.Tifrunner.gnm1.ann1.C1QAGZ Arachis hypogaea HOM05D007675 ORTHO05D009699 3.4e-29 133.7 211 40.3
A07p04830 Brassica napus HOM05D007675 ORTHO05D009699 4.5e-29 133.3 204 42.2
Psat6g221080 Pisum sativum HOM05D007675 ORTHO05D009699 4.5e-29 133.3 199 40.7
MSTRG.27711 Avicennia marina HOM05D007675 ORTHO05D009699 5.8e-29 132.9 276 37.0
Carub.0003s2985 Capsella rubella HOM05D007675 ORTHO05D009699 5.8e-29 132.9 214 40.7
CDE04G1316 Ceratophyllum demersum HOM05D007675 ORTHO05D009699 1.3e-28 131.7 205 40.5
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 1.3e-28 131.7 199 41.2
Phvul.011G049000 Phaseolus vulgaris HOM05D007675 ORTHO05D009699 1.3e-28 131.7 207 44.0
Nitab4.5_0000876g0030 Nicotiana tabacum HOM05D007675 ORTHO05D009699 1.7e-28 131.3 197 41.1
Thhalv10022658m.g Eutrema salsugineum HOM05D007675 ORTHO05D009699 2.2e-28 131.0 273 35.9
VMungo1127G1032 Vigna mungo HOM05D007675 ORTHO05D009699 2.2e-28 131.0 207 42.5
arahy.Tifrunner.gnm1.ann1.F8FJH0 Arachis hypogaea HOM05D007675 ORTHO05D009699 3.8e-28 130.2 211 39.3
Sp3g29280 Schrenkiella parvula HOM05D007675 ORTHO05D009699 6.4e-28 129.4 205 39.0
Potri.009G110400 Populus trichocarpa HOM05D007675 ORTHO05D009699 1.1e-27 128.6 134 47.0
TPR.G29893 Trifolium pratense HOM05D007675 ORTHO05D009699 3.2e-27 127.1 163 46.6
DCAR_022084 Daucus carota HOM05D007675 ORTHO05D009699 5.5e-27 126.3 482 27.8
AUR62016675 Chenopodium quinoa HOM05D007675 ORTHO05D009699 2.3e-25 120.9 134 47.0
Sed0019685 Sechium edule HOM05D007675 ORTHO05D009699 6.7e-25 119.4 143 44.8
ATR0733G100 Amborella trichopoda HOM05D007675 ORTHO05D009699 7.6e-21 105.9 217 33.2
SHI05443 Sapria himalayana HOM05D007675 ORTHO05D009699 7.6e-21 105.9 143 40.6
HPP92_017783 Vanilla planifolia HOM05D007675 ORTHO05D009699 1.3e-20 105.1 203 34.5
Lalb_Chr03g0025891 Lupinus albus HOM05D007675 ORTHO05D009699 1.2e-18 98.6 129 45.7
Os12g0407900 Oryza sativa ssp. japonica HOM05D007675 ORTHO05D009699 2.1e-18 97.8 244 29.9
Ca_20831_v3 Cicer arietinum L. HOM05D007675 ORTHO05D009699 5.0e-12 76.6 94 46.8
Dinv18645 Davidia involucrata HOM05D028771 ORTHO05D026283 1.4e-11 75.1 111 40.5
Dinv26260 Davidia involucrata HOM05D028771 ORTHO05D026283 1.4e-11 75.1 111 40.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.4e-11 75.1 133 30.1
Peaxi162Scf00003g00147 Petunia axillaris HOM05D007675 ORTHO05D009699 7.9e-10 69.3 110 36.4
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.0e-09 68.9 230 26.5
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 1.4e-09 68.6 149 33.6
Zm00001eb322070 Zea mays HOM05D007675 ORTHO05D009699 3.0e-09 67.4 212 28.3
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 3.9e-09 67.0 228 24.1
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 3.9e-09 67.0 216 26.4
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 6.7e-09 66.2 214 27.6
Zm00001eb322100 Zea mays HOM05D007675 ORTHO05D009699 8.8e-09 65.9 212 27.8
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 1.1e-08 65.5 112 31.2
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.1e-08 65.5 128 32.8
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.1e-08 65.5 214 27.1
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.1e-08 65.5 214 27.1
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 1.1e-08 65.5 142 30.3
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 2.0e-08 64.7 179 25.7
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 2.0e-08 64.7 129 31.8
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.0e-08 64.7 130 28.5
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 2.5e-08 64.3 118 30.5
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 3.3e-08 63.9 118 30.5
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 3.3e-08 63.9 130 30.8
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 5.7e-08 63.2 77 41.6
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 5.7e-08 63.2 130 30.0
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 7.4e-08 62.8 111 32.4
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 7.4e-08 62.8 111 32.4
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 7.4e-08 62.8 111 32.4
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 7.4e-08 62.8 111 32.4
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 7.4e-08 62.8 216 25.9
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 7.4e-08 62.8 239 27.2
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 9.7e-08 62.4 222 21.6
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 1.3e-07 62.0 83 39.8
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 1.7e-07 61.6 216 25.5
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 1.7e-07 61.6 106 32.1
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 2.2e-07 61.2 245 20.4
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 2.2e-07 61.2 81 40.7
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 2.8e-07 60.8 226 24.8
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 2.8e-07 60.8 119 28.6
TPR.G1694 Trifolium pratense HOM05D007390 ORTHO05D009114 3.7e-07 60.5 77 37.7
Actinidia00486 Actinidia chinensis HOM05D028771 ORTHO05D026283 4.8e-07 60.1 74 44.6
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 4.8e-07 60.1 131 28.2
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 4.8e-07 60.1 128 29.7
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 4.8e-07 60.1 64 43.8
Hund07420 Selenicereus undatus HOM05D007390 ORTHO05D009114 6.3e-07 59.7 77 36.4
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 8.2e-07 59.3 125 30.4
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 1.1e-06 58.9 115 28.7
Aqoxy4G00642 Aquilegia oxysepala HOM05D007390 ORTHO05D009114 1.1e-06 58.9 78 37.2
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 1.1e-06 58.9 171 27.5
Oeu032258.1 Olea europaea HOM05D007291 ORTHO05D009038 1.1e-06 58.9 227 21.1
Thecc.07G011700 Theobroma cacao HOM05D007390 ORTHO05D009114 1.1e-06 58.9 80 40.0
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 1.4e-06 58.5 129 29.5
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 1.4e-06 58.5 171 27.5
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 1.4e-06 58.5 125 29.6
Migut.F01991 Erythranthe guttata HOM05D007390 ORTHO05D009114 1.4e-06 58.5 90 36.7
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 1.4e-06 58.5 93 37.6
GSVIVG01037263001 Vitis vinifera HOM05D007455 ORTHO05D009431 1.4e-06 58.5 78 35.9
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 2.4e-06 57.8 131 27.5
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 2.4e-06 57.8 86 32.6
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 2.4e-06 57.8 227 21.6
Psat6g031600 Pisum sativum HOM05D007390 ORTHO05D009114 2.4e-06 57.8 127 30.7
Carub.0008s1619 Capsella rubella HOM05D007390 ORTHO05D009114 3.1e-06 57.4 83 36.1
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 3.1e-06 57.4 147 29.3
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 4.1e-06 57.0 108 31.5
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 4.1e-06 57.0 112 31.2
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 4.1e-06 57.0 206 25.7
CDE12G0148 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 4.1e-06 57.0 193 24.9
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 4.1e-06 57.0 139 27.3
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 5.3e-06 56.6 112 31.2
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 5.3e-06 56.6 113 29.2
Nitab4.5_0000163g0140 Nicotiana tabacum HOM05D007390 ORTHO05D009114 5.3e-06 56.6 79 34.2
Phvul.009G209400 Phaseolus vulgaris HOM05D007390 ORTHO05D009114 5.3e-06 56.6 77 36.4
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 5.3e-06 56.6 159 28.9
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 5.3e-06 56.6 107 29.0
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 6.9e-06 56.2 234 28.2
arahy.Tifrunner.gnm1.ann1.885AEG Arachis hypogaea HOM05D007390 ORTHO05D009114 6.9e-06 56.2 95 35.8
Lj6g0008328 Lotus japonicus HOM05D007390 ORTHO05D009114 6.9e-06 56.2 121 32.2
Psat1g149640 Pisum sativum HOM05D007390 ORTHO05D009114 6.9e-06 56.2 77 35.1
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 6.9e-06 56.2 122 32.0
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 6.9e-06 56.2 131 29.0
TPR.G21860 Trifolium pratense HOM05D007063 ORTHO05D008822 6.9e-06 56.2 258 24.0
AUR62017120 Chenopodium quinoa HOM05D007390 ORTHO05D009114 9.1e-06 55.8 129 27.9
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 9.1e-06 55.8 167 26.9


User provided reference genes

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