Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 2.2e-293 1011.5 505 100.0
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 6.2e-219 764.2 533 73.9
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-192 676.4 510 67.1
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 4.2e-191 671.8 499 69.1
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 7.9e-166 587.8 494 60.3
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 4.7e-158 562.0 505 59.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 8.8e-157 557.8 494 60.9
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 2.6e-156 556.2 473 60.0
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 2.2e-155 553.1 502 58.4
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 4.1e-154 548.9 507 56.8
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 4.5e-153 545.4 458 60.3
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.2e-152 543.1 459 59.7
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 2.9e-152 542.7 513 56.5
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 3.8e-152 542.3 449 60.8
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 3.8e-152 542.3 449 61.0
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 6.5e-152 541.6 498 56.8
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 6.5e-152 541.6 449 61.0
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 2.5e-151 539.7 504 56.5
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 3.2e-151 539.3 455 60.2
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 4.2e-151 538.9 496 57.3
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 9.4e-151 537.7 459 59.5
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.1e-150 536.6 510 55.3
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 3.6e-150 535.8 460 60.2
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 4.7e-150 535.4 453 59.4
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 6.1e-150 535.0 489 58.5
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 8.0e-150 534.6 459 58.6
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.0e-149 534.3 443 61.6
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.3e-149 533.1 503 53.9
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 3.0e-149 532.7 475 57.3
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 5.2e-149 531.9 493 55.6
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.5e-148 530.4 450 60.4
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 2.8e-147 526.2 455 58.5
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.8e-147 526.2 503 53.1
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.8e-147 525.4 456 58.8
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 6.3e-147 525.0 456 59.4
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 1.1e-146 524.2 503 55.5
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 1.4e-146 523.9 464 56.9
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.4e-146 523.1 461 57.9
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 7.0e-146 521.5 456 59.2
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 9.1e-146 521.2 450 57.1
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 1.2e-145 520.8 444 57.4
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.0e-145 520.0 456 59.0
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 2.7e-145 519.6 507 53.5
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 4.5e-145 518.8 483 56.9
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 4.5e-145 518.8 450 57.6
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 5.9e-145 518.5 467 58.0
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 1.3e-144 517.3 503 55.3
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.7e-144 516.9 494 53.2
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 2.2e-144 516.5 466 57.9
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 3.8e-144 515.8 456 57.0
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 6.5e-144 515.0 490 54.5
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.1e-143 514.2 432 58.8
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.5e-143 513.8 505 54.1
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 2.5e-143 513.1 422 59.0
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 3.2e-143 512.7 498 54.8
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 3.2e-143 512.7 499 52.1
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 7.2e-143 511.5 511 54.4
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 9.4e-143 511.1 466 57.3
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.0e-141 507.7 464 56.0
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.0e-141 507.7 425 61.4
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.0e-141 507.7 483 55.5
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 2.3e-141 506.5 461 54.0
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.0e-141 506.1 440 57.0
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 6.8e-141 505.0 464 56.2
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 6.8e-141 505.0 490 52.7
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 8.8e-141 504.6 456 56.8
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 4.4e-140 502.3 426 57.3
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 2.2e-139 500.0 435 56.8
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 2.8e-139 499.6 458 55.7
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 2.8e-139 499.6 460 55.7
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 6.3e-139 498.4 464 56.0
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.4e-138 497.3 462 55.8
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.4e-138 497.3 462 55.8
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 2.4e-138 496.5 450 58.9
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 7.0e-138 495.0 520 51.2
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 7.0e-138 495.0 462 55.6
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 2.7e-137 493.0 522 52.5
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 1.3e-136 490.7 464 55.6
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 1.3e-136 490.7 473 52.2
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.8e-136 489.2 452 58.0
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 6.5e-136 488.4 456 56.1
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 1.1e-135 487.6 462 54.5
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 2.5e-135 486.5 411 61.3
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 9.5e-135 484.6 509 51.5
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.2e-134 484.2 462 54.5
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.6e-134 483.8 456 55.5
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 4.7e-134 482.3 487 53.8
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.0e-133 481.1 361 62.6
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 4.0e-133 479.2 417 56.6
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 8.3e-131 471.5 465 52.7
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 1.1e-130 471.1 447 54.6
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 4.1e-130 469.2 447 54.8
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 1.6e-129 467.2 454 52.4
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 7.7e-129 464.9 436 52.3
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-128 463.8 349 66.8
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 5.6e-127 458.8 509 48.5
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 3.4e-124 449.5 400 56.8
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 9.8e-124 448.0 501 48.5
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.3e-123 447.6 445 52.1
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.2e-123 446.8 434 53.9
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 6.4e-123 445.3 400 56.5
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 1.1e-119 434.5 478 47.9
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 9.5e-119 431.4 345 61.2
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.7e-115 420.6 354 60.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 8.3e-115 418.3 457 49.7
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 2.8e-110 403.3 356 57.0
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 1.8e-109 400.6 349 58.5
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 1.7e-88 330.9 292 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 3.0e-80 303.5 453 41.3
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 6.2e-78 295.8 212 67.9
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 8.4e-75 285.4 418 38.8
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.6e-73 281.2 230 60.9
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 1.8e-72 277.7 208 66.8
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 3.0e-72 276.9 246 60.2
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 4.3e-71 273.1 199 67.8
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.1e-66 258.5 405 39.8
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.3e-59 235.0 466 34.1
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 3.9e-56 223.4 392 37.0
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 9.4e-50 202.2 180 58.9
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 8.5e-43 179.1 175 55.4
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 2.6e-39 167.5 392 31.4
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.3e-39 167.2 263 42.6
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.3e-38 165.2 326 35.0
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 8.2e-38 162.5 320 36.9
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 7.0e-37 159.5 170 50.6
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 1.6e-36 158.3 171 49.1
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 6.8e-24 116.3 157 38.2
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 1.2e-23 115.5 75 74.7
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 7.0e-21 106.3 80 62.5
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.7e-19 101.7 121 47.9
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.3e-19 101.3 125 45.6
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 3.6e-17 94.0 111 45.0
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.1e-17 93.2 117 46.2
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.4e-13 82.0 56 69.6


User provided reference genes

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