Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 5.7e-155 550.8 266 100.0
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.3e-66 257.3 162 81.5
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 5.8e-51 205.3 156 71.2
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 3.0e-47 193.0 156 66.0
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 9.0e-44 181.4 156 61.5
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 3.5e-40 169.5 156 59.0
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 4.6e-40 169.1 151 57.6
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 1.3e-39 167.5 156 58.3
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 8.7e-39 164.9 156 57.7
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 3.3e-38 162.9 176 54.0
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 3.3e-38 162.9 176 54.0
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 4.3e-38 162.5 151 57.0
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 5.7e-38 162.2 156 56.4
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 1.3e-37 161.0 156 55.8
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 2.8e-37 159.8 157 53.5
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.8e-37 159.8 156 55.8
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 3.7e-37 159.5 156 57.1
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 3.7e-37 159.5 156 57.1
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 3.7e-37 159.5 151 55.0
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 3.7e-37 159.5 151 54.3
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 4.8e-37 159.1 151 55.0
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 8.2e-37 158.3 178 52.8
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 3.1e-36 156.4 156 55.1
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 5.3e-36 155.6 151 54.3
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 2.0e-35 153.7 175 50.9
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 2.6e-35 153.3 156 53.8
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 4.5e-35 152.5 151 55.0
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 1.3e-34 151.0 156 53.8
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 1.7e-34 150.6 158 52.5
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 2.2e-34 150.2 151 53.0
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 3.8e-34 149.4 156 51.3
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 5.0e-34 149.1 156 51.3
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 6.5e-34 148.7 156 51.3
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 6.5e-34 148.7 156 51.3
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 6.5e-34 148.7 153 52.9
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 1.9e-33 147.1 162 50.6
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 1.9e-33 147.1 160 51.9
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 2.5e-33 146.7 154 51.9
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 3.2e-33 146.4 156 53.2
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 4.2e-33 146.0 157 51.6
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 4.2e-33 146.0 160 51.9
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 4.2e-33 146.0 151 53.0
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 7.2e-33 145.2 154 52.6
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 9.3e-33 144.8 160 48.1
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 9.3e-33 144.8 154 53.2
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 9.3e-33 144.8 158 51.3
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 9.3e-33 144.8 160 51.9
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 1.6e-32 144.1 156 48.7
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 2.1e-32 143.7 156 49.4
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 2.1e-32 143.7 151 49.7
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 2.1e-32 143.7 156 52.6
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 2.7e-32 143.3 151 49.7
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 4.6e-32 142.5 156 50.0
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 4.6e-32 142.5 156 50.0
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 7.9e-32 141.7 156 50.0
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 7.9e-32 141.7 160 49.4
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.0e-31 141.4 160 50.0
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.0e-31 141.4 190 44.7
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 1.0e-31 141.4 157 49.7
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 1.0e-31 141.4 153 50.3
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 1.4e-31 141.0 151 50.3
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 1.8e-31 140.6 158 48.7
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.8e-31 140.6 153 51.0
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 2.3e-31 140.2 159 49.7
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 2.3e-31 140.2 160 50.6
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.3e-31 140.2 160 51.2
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 3.0e-31 139.8 156 50.0
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 3.0e-31 139.8 160 50.6
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 3.0e-31 139.8 160 50.6
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 5.1e-31 139.0 156 50.0
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 5.1e-31 139.0 160 50.0
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 5.1e-31 139.0 156 48.1
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 6.7e-31 138.7 156 48.7
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 6.7e-31 138.7 156 48.7
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 6.7e-31 138.7 156 49.4
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 6.7e-31 138.7 156 49.4
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 6.7e-31 138.7 156 49.4
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 6.7e-31 138.7 155 50.3
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.1e-30 137.9 156 48.7
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.1e-30 137.9 158 48.7
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 1.1e-30 137.9 156 48.7
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 1.9e-30 137.1 156 49.4
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.9e-30 137.1 158 50.0
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.9e-30 137.1 160 50.0
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 3.3e-30 136.3 158 50.0
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 3.3e-30 136.3 160 48.8
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 7.4e-30 135.2 151 47.7
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 7.4e-30 135.2 154 49.4
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 1.7e-29 134.0 158 46.8
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 2.8e-29 133.3 153 49.0
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 2.8e-29 133.3 160 48.1
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 2.8e-29 133.3 162 48.1
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 4.8e-29 132.5 154 51.9
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 8.2e-29 131.7 151 47.0
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 8.2e-29 131.7 151 49.7
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 1.1e-28 131.3 162 45.7
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 3.1e-28 129.8 156 48.7
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 2.0e-27 127.1 156 45.5
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 2.0e-27 127.1 156 44.9
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 2.0e-27 127.1 160 45.0
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 4.5e-27 125.9 237 38.0
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 7.7e-27 125.2 156 44.2
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.3e-26 124.4 166 47.6
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.7e-26 124.0 155 43.9
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 8.5e-26 121.7 164 46.3
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 1.9e-25 120.6 162 43.8
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 2.5e-25 120.2 156 42.9
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 3.2e-25 119.8 165 45.5
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 5.5e-25 119.0 165 45.5
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.6e-22 110.2 112 51.8
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.2e-21 107.1 151 42.4
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 3.7e-21 106.3 153 42.5
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.7e-21 106.3 151 41.1
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.7e-21 106.3 152 42.8
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 3.7e-21 106.3 161 41.6
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 4.8e-21 105.9 159 42.1
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 1.5e-19 100.9 157 39.5
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 2.5e-17 93.6 132 38.6
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 2.7e-16 90.1 93 49.5
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 4.7e-16 89.4 190 33.7
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 2.6e-11 73.6 103 44.7
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 2.6e-11 73.6 161 35.4
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.9e-09 67.4 70 47.1
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 5.5e-09 65.9 101 41.6
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 1.6e-08 64.3 101 40.6


User provided reference genes

Program Settings