Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 0.0e+00 1251.9 647 100.0
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 3.6e-163 579.3 555 62.7
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.3e-139 501.1 583 56.3
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.4e-135 487.6 602 53.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 3.3e-124 449.9 572 52.6
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 3.3e-124 449.9 572 52.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.8e-123 446.0 481 57.8
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.1e-122 444.9 580 50.0
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 1.9e-116 424.1 547 50.1
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.6e-115 421.0 552 48.4
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.1e-115 420.6 587 48.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 4.0e-114 416.4 564 50.0
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.3e-114 416.0 554 50.2
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 4.5e-113 412.9 574 49.1
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.9e-111 407.5 556 48.7
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 5.5e-111 406.0 602 46.2
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.3e-111 405.2 598 46.2
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.9e-109 399.8 566 45.6
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.1e-108 398.3 571 46.4
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.3e-107 394.8 591 46.4
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.4e-106 390.6 574 47.2
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 6.9e-106 389.0 570 46.3
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.5e-105 386.3 573 45.5
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 7.7e-105 385.6 573 46.6
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.7e-104 384.4 565 47.6
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.9e-104 383.6 553 46.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.9e-104 383.6 573 45.4
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.9e-104 383.6 529 48.6
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.8e-104 383.3 568 47.4
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.0e-104 382.9 536 48.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.5e-104 382.5 504 49.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.4e-103 381.3 578 45.0
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-103 381.3 502 47.4
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.6e-102 377.9 508 48.4
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.6e-102 377.9 556 46.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.1e-102 377.5 596 42.3
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 3.6e-102 376.7 649 41.3
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.6e-102 376.3 573 44.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 6.1e-102 375.9 552 45.3
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.0e-101 375.2 566 45.8
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.0e-101 373.6 565 45.5
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.0e-101 373.6 578 45.5
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 6.7e-101 372.5 652 41.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.5e-100 371.3 566 44.7
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 7.4e-100 369.0 613 43.1
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.2e-99 367.5 585 42.7
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.8e-99 367.1 623 42.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.7e-99 366.7 521 46.1
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 4.8e-99 366.3 560 43.9
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.3e-99 365.9 605 43.3
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 2.6e-97 360.5 570 44.9
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 4.5e-97 359.8 552 44.2
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.0e-96 358.6 546 46.5
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.5e-95 352.8 546 46.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.0e-93 348.6 549 42.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 2.3e-93 347.4 502 45.0
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.0e-93 347.1 567 42.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 3.0e-93 347.1 552 44.0
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 3.9e-93 346.7 547 43.1
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 6.7e-93 345.9 560 42.3
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.5e-92 344.7 632 42.4
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.6e-92 344.0 631 42.0
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 5.7e-92 342.8 502 44.4
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 6.3e-91 339.3 658 38.9
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 9.1e-90 335.5 578 41.9
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 1.0e-88 332.0 551 42.8
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.2e-88 330.9 560 43.2
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.1e-87 328.6 454 45.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.2e-87 327.0 554 41.5
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.1e-86 324.3 535 42.1
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.7e-86 323.9 539 41.9
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 4.7e-86 323.2 535 41.7
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 6.1e-86 322.8 572 42.0
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.4e-85 321.6 582 40.2
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 6.7e-85 319.3 571 42.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.1e-84 318.5 678 37.6
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.7e-83 314.7 560 42.5
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.7e-83 314.7 577 40.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.1e-82 312.0 487 42.7
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 7.7e-81 305.8 568 41.7
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 3.8e-80 303.5 568 40.5
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 6.5e-80 302.8 546 41.8
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 3.2e-79 300.4 504 41.7
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.1e-78 297.7 579 39.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.7e-78 297.4 577 38.3
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 4.7e-78 296.6 545 40.7
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.3e-77 294.3 467 43.3
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.3e-77 294.3 553 40.0
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.2e-75 287.7 380 49.5
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.8e-75 286.6 600 38.3
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.4e-74 285.0 438 43.8
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.4e-74 285.0 517 38.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 3.8e-72 276.9 440 46.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 6.5e-72 276.2 486 39.9
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.1e-71 275.4 455 45.7
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.5e-71 275.0 478 42.3
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.0e-69 268.9 635 36.9
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.8e-69 268.1 509 37.5
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.8e-69 268.1 544 38.6
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 5.2e-69 266.5 548 39.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 5.2e-69 266.5 548 39.6
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 8.8e-69 265.8 245 59.2
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-68 265.0 599 36.2
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.0e-68 264.6 550 37.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 5.7e-68 263.1 612 35.8
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 1.7e-67 261.5 201 69.2
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.6e-65 255.0 511 37.0
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 2.7e-65 254.2 599 36.1
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.0e-64 252.3 561 37.3
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.3e-63 247.3 272 51.5
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-56 225.7 296 50.7
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.0e-53 213.8 219 49.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.4e-50 205.3 355 41.4
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.5e-47 195.3 367 40.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 6.2e-46 189.9 392 37.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.3e-45 188.0 315 42.2
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 2.2e-43 181.4 307 37.1
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 4.6e-41 173.7 320 41.9
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 5.1e-40 170.2 232 44.0
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.2e-36 159.1 152 63.2
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.4e-34 151.4 347 37.5
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 3.2e-34 151.0 151 53.6
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 4.6e-33 147.1 232 37.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.6e-30 138.7 100 66.0
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 2.1e-30 138.3 153 54.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 2.0e-28 131.7 210 45.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 1.7e-27 128.6 150 52.7
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 2.1e-25 121.7 343 32.9
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.5e-25 120.9 145 48.3
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 3.1e-21 107.8 71 66.2
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 5.4e-18 97.1 166 39.8
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 9.3e-18 96.3 73 69.9
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.2e-17 95.9 100 44.0
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.4e-13 82.4 61 68.9
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 2.2e-11 75.1 132 34.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.4e-11 73.6 125 45.6
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.9e-10 72.0 69 56.5
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 5.1e-08 63.9 39 69.2
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.1e-08 63.9 72 43.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 8.7e-08 63.2 119 43.7
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.1e-07 62.8 78 44.9
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 5.6e-07 60.5 42 69.0
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 7.4e-07 60.1 31 83.9


User provided reference genes

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