Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0135800 Rhododendron simsii HOM05D000371 ORTHO05D008019 1.7e-219 765.8 398 100.0
vmacro07056 Vaccinium macrocarpon HOM05D000371 ORTHO05D008019 1.1e-58 231.5 313 53.7
vmacro05072 Vaccinium macrocarpon HOM05D000371 ORTHO05D008019 1.8e-51 207.6 314 49.7
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 2.5e-45 187.2 303 46.2
Dinv06770 Davidia involucrata HOM05D000371 ORTHO05D008019 5.1e-43 179.5 302 46.0
MSTRG.8260 Avicennia marina HOM05D000371 ORTHO05D008019 6.7e-43 179.1 303 47.5
TAR636G0788 Trochodendron aralioides HOM05D000371 ORTHO05D008019 6.7e-43 179.1 292 45.5
TAR636G0917 Trochodendron aralioides HOM05D000371 ORTHO05D008019 6.7e-43 179.1 292 45.5
Peaxi162Scf00440g00111 Petunia axillaris HOM05D000371 ORTHO05D008019 1.9e-42 177.6 306 45.1
Sc11g0007880 Simmondsia chinensis HOM05D000371 ORTHO05D008019 5.7e-42 176.0 314 46.2
Actinidia02935 Actinidia chinensis HOM05D000371 ORTHO05D008019 4.8e-41 172.9 317 46.1
HanXRQChr10g0312861 Helianthus annuus HOM05D000371 ORTHO05D008019 8.2e-41 172.2 293 45.7
MBI14_g04656_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D008019 8.2e-41 172.2 293 45.7
Nitab4.5_0012064g0010 Nicotiana tabacum HOM05D000371 ORTHO05D008019 8.2e-41 172.2 298 45.0
Cc02_g07590 Coffea canephora HOM05D000371 ORTHO05D008019 2.4e-40 170.6 295 45.8
Nitab4.5_0001002g0040 Nicotiana tabacum HOM05D000371 ORTHO05D008019 4.1e-40 169.9 293 45.4
CAN.G1826.1 Capsicum annuum HOM05D000371 ORTHO05D008019 5.3e-40 169.5 293 45.1
SGA_v2.0_scaffold221G42682 Striga asiatica HOM05D000371 ORTHO05D008019 1.2e-39 168.3 291 43.3
Aqoxy2G02270 Aquilegia oxysepala HOM05D000371 ORTHO05D008019 1.5e-39 167.9 293 43.3
Lsat_1_v5_gn_2_118301 Lactuca sativa HOM05D000371 ORTHO05D008019 2.6e-39 167.2 293 44.0
ATR0559G040 Amborella trichopoda HOM05D000371 ORTHO05D008019 4.5e-39 166.4 340 40.0
Os05g0458100 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D008019 4.5e-39 166.4 293 43.7
Manes.07G117900 Manihot esculenta HOM05D000371 ORTHO05D008019 5.9e-39 166.0 293 43.0
ECA238G3066 Erigeron canadensis HOM05D000371 ORTHO05D008019 7.7e-39 165.6 293 43.7
PGSC0003DMG400006351 Solanum tuberosum HOM05D000371 ORTHO05D008019 7.7e-39 165.6 293 44.4
Zm00001eb289600 Zea mays HOM05D000371 ORTHO05D008019 7.7e-39 165.6 293 43.3
MD07G1201400 Malus domestica HOM05D000371 ORTHO05D008019 1.0e-38 165.2 303 43.2
CANSAT56G3583 Cannabis sativa HOM05D000371 ORTHO05D008019 1.3e-38 164.9 293 44.4
Solyc04g011620.3 Solanum lycopersicum HOM05D000371 ORTHO05D008019 1.3e-38 164.9 293 44.4
Sopen04g005800 Solanum pennellii HOM05D000371 ORTHO05D008019 1.3e-38 164.9 293 44.4
Haze_17090 Corylus avellana HOM05D000371 ORTHO05D008019 2.2e-38 164.1 287 45.6
FAN03G2093 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.2e-38 164.1 316 42.4
GSVIVG01016514001 Vitis vinifera HOM05D000371 ORTHO05D008019 2.9e-38 163.7 293 43.0
Cpa.g.sc1.428 Carica papaya HOM05D000371 ORTHO05D008019 8.5e-38 162.2 303 45.5
LjContig00141g0009492 Lotus japonicus HOM05D000371 ORTHO05D008019 1.4e-37 161.4 303 44.6
FAN01G2167 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.5e-37 160.6 307 41.7
Sp5g06960 Schrenkiella parvula HOM05D000371 ORTHO05D008019 3.2e-37 160.2 293 41.6
PGR142G1272 Punica granatum HOM05D000371 ORTHO05D008019 4.2e-37 159.8 301 43.9
Ah.16g102470 Amaranthus hybridus HOM05D003811 ORTHO05D008019 9.4e-37 158.7 289 42.6
FvH4_7g22820 Fragaria vesca HOM05D000371 ORTHO05D008019 9.4e-37 158.7 316 41.8
FAN06G1941 Fragaria x ananassa HOM05D000371 ORTHO05D008019 9.4e-37 158.7 316 41.8
FAN06G2012 Fragaria x ananassa HOM05D000371 ORTHO05D008019 9.4e-37 158.7 316 41.8
FAN10G2093 Fragaria x ananassa HOM05D000371 ORTHO05D008019 9.4e-37 158.7 305 42.3
Lalb_Chr04g0251111 Lupinus albus HOM05D000371 ORTHO05D008019 9.4e-37 158.7 293 42.0
Phvul.001G233400 Phaseolus vulgaris HOM05D000371 ORTHO05D008019 9.4e-37 158.7 303 44.2
Hund13781 Selenicereus undatus HOM05D000371 ORTHO05D008019 9.4e-37 158.7 293 43.0
Ciclev10032851m.g Citrus clementina HOM05D000371 ORTHO05D008019 1.2e-36 158.3 287 44.3
MD01G1136400 Malus domestica HOM05D000371 ORTHO05D008019 1.2e-36 158.3 303 42.6
Medtr5g080300 Medicago truncatula HOM05D000371 ORTHO05D008019 1.2e-36 158.3 303 41.6
TPR.G3468 Trifolium pratense HOM05D000371 ORTHO05D008019 1.2e-36 158.3 303 43.2
Psat2g040520 Pisum sativum HOM05D000371 ORTHO05D008019 1.6e-36 157.9 293 42.0
QL08p060252 Quercus lobata HOM05D000371 ORTHO05D008019 1.6e-36 157.9 268 40.7
QL08p060477 Quercus lobata HOM05D000371 ORTHO05D008019 1.6e-36 157.9 268 40.7
Cfa001451 Carpinus fangiana HOM05D000371 ORTHO05D008019 2.1e-36 157.5 263 41.1
Thecc.10G036900 Theobroma cacao HOM05D000371 ORTHO05D008019 2.1e-36 157.5 303 43.9
FAN01G1452 Fragaria x ananassa HOM05D000371 ORTHO05D008019 2.7e-36 157.1 300 42.7
PSO513G0068 Papaver somniferum HOM05D000371 ORTHO05D008019 6.1e-36 156.0 292 42.5
Glyma.18G037300 Glycine max HOM05D000371 ORTHO05D008019 7.9e-36 155.6 290 42.1
Prupe.2G238000 Prunus persica HOM05D000371 ORTHO05D008019 7.9e-36 155.6 293 42.7
RcHm_v2.0_Chr1g0367961 Rosa chinensis HOM05D000371 ORTHO05D008019 7.9e-36 155.6 293 42.0
CiPaw.01G289600 Carya illinoinensis HOM05D000371 ORTHO05D008019 1.0e-35 155.2 289 42.6
CDE04G1493 Ceratophyllum demersum HOM05D000371 ORTHO05D008019 1.0e-35 155.2 303 43.6
BcaB02g07683 Brassica carinata HOM05D000371 ORTHO05D008019 1.8e-35 154.5 293 41.3
BcaC07g39878 Brassica carinata HOM05D000371 ORTHO05D008019 2.3e-35 154.1 293 41.6
A09p48530 Brassica napus HOM05D000371 ORTHO05D008019 3.0e-35 153.7 293 41.3
BraA09t40305Z Brassica rapa HOM05D000371 ORTHO05D008019 3.0e-35 153.7 293 41.3
DCAR_010468 Daucus carota HOM05D000371 ORTHO05D008019 3.0e-35 153.7 266 40.2
PSO339G5068 Papaver somniferum HOM05D000371 ORTHO05D008019 3.0e-35 153.7 292 41.8
C08p30830 Brassica napus HOM05D000371 ORTHO05D008019 3.9e-35 153.3 293 41.3
BolC8t50709H Brassica oleracea HOM05D000371 ORTHO05D008019 3.9e-35 153.3 293 41.3
TWI38G0343 Tripterygium wilfordii HOM05D000371 ORTHO05D008019 3.9e-35 153.3 266 39.1
AL5G36690 Arabidopsis lyrata HOM05D000371 ORTHO05D008019 5.1e-35 152.9 293 41.3
THA.LOC104810039 Tarenaya hassleriana HOM05D000371 ORTHO05D008019 5.1e-35 152.9 266 38.7
MELO3C008222.2 Cucumis melo HOM05D000371 ORTHO05D008019 6.7e-35 152.5 293 41.3
Potri.010G201600 Populus trichocarpa HOM05D000371 ORTHO05D008019 6.7e-35 152.5 303 42.9
CARHR165580 Cardamine hirsuta HOM05D000371 ORTHO05D008019 8.8e-35 152.1 293 39.2
CsaV3_6G001250 Cucumis sativus L. HOM05D000371 ORTHO05D008019 8.8e-35 152.1 293 41.0
Aa31LG10G10550 Aethionema arabicum HOM05D000371 ORTHO05D008019 1.1e-34 151.8 290 38.6
BcaB01g00086 Brassica carinata HOM05D000371 ORTHO05D008019 1.1e-34 151.8 293 41.0
Carub.0005s2225 Capsella rubella HOM05D000371 ORTHO05D008019 1.1e-34 151.8 293 41.3
AT3G55520 Arabidopsis thaliana HOM05D000371 ORTHO05D008019 2.0e-34 151.0 293 41.3
Os01g0844300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D008019 2.5e-34 150.6 293 40.6
EL10Ac2g04725 Beta vulgaris HOM05D000371 ORTHO05D008019 3.3e-34 150.2 303 42.2
Duzib114G0336 Durio zibethinus HOM05D000371 ORTHO05D008019 4.3e-34 149.8 303 41.9
CSS0017369 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D008019 7.4e-34 149.1 303 44.2
Thhalv10010745m.g Eutrema salsugineum HOM05D000371 ORTHO05D008019 7.4e-34 149.1 293 40.6
arahy.Tifrunner.gnm1.ann1.JFIJ48 Arachis hypogaea HOM05D000371 ORTHO05D008019 9.7e-34 148.7 290 41.0
ClCG11G006790 Citrullus lanatus HOM05D000371 ORTHO05D008019 9.7e-34 148.7 299 40.5
VMungo1383G3505 Vigna mungo HOM05D000371 ORTHO05D008019 9.7e-34 148.7 168 65.5
Sabra10G0155600 Salix brachista HOM05D000371 ORTHO05D008019 1.3e-33 148.3 303 41.9
Sabra08G0042500 Salix brachista HOM05D000371 ORTHO05D008019 1.7e-33 147.9 293 40.3
Atru.chr12.417 Acer truncatum HOM05D000371 ORTHO05D008019 2.2e-33 147.5 263 38.4
Glyma.11G220100 Glycine max HOM05D000371 ORTHO05D008019 2.2e-33 147.5 263 38.0
Potri.008G057900 Populus trichocarpa HOM05D000371 ORTHO05D008019 2.8e-33 147.1 293 40.6
Sed0007769 Sechium edule HOM05D000371 ORTHO05D008019 2.8e-33 147.1 293 40.3
Migut.F01460 Erythranthe guttata HOM05D000371 ORTHO05D008019 4.8e-33 146.4 263 37.6
Gohir.A06G166600 Gossypium hirsutum HOM05D000371 ORTHO05D008019 1.1e-32 145.2 290 40.7
arahy.Tifrunner.gnm1.ann1.1L6ASM Arachis hypogaea HOM05D000371 ORTHO05D008019 1.4e-32 144.8 290 40.0
Lj8A82T52 Lonicera japonica HOM05D000371 ORTHO05D008019 4.1e-32 143.3 253 39.1
Gorai.010G201100 Gossypium raimondii HOM05D000371 ORTHO05D008019 7.7e-31 139.0 286 40.2
Gohir.D06G172100 Gossypium hirsutum HOM05D000371 ORTHO05D008019 1.0e-30 138.7 286 40.2
SEGI_15620 Sequoiadendron giganteum HOM05D000371 ORTHO05D008019 1.3e-30 138.3 158 57.6
SEGI_39657 Sequoiadendron giganteum HOM05D000371 ORTHO05D008019 1.3e-30 138.3 158 57.6
Ca_05882_v3 Cicer arietinum L. HOM05D000371 ORTHO05D008019 1.9e-29 134.4 253 36.4
Pp3c15_21140 Physcomitrium patens HOM05D000371 ORTHO05D008019 4.7e-28 129.8 263 32.7
HPP92_019450 Vanilla planifolia HOM05D000371 ORTHO05D008019 1.0e-27 128.6 138 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2045 Anthoceros agrestis HOM05D000371 ORTHO05D008019 2.3e-27 127.5 303 35.0
AUR62040720 Chenopodium quinoa HOM05D000371 ORTHO05D008019 1.1e-26 125.2 253 34.4
Pp3c9_23060 Physcomitrium patens HOM05D000371 ORTHO05D008019 2.6e-26 124.0 293 35.8
SMO143G0281 Selaginella moellendorffii HOM05D000371 ORTHO05D008019 2.6e-26 124.0 291 36.1
AUR62012115 Chenopodium quinoa HOM05D000371 ORTHO05D008019 1.3e-25 121.7 253 34.0
COL.COLO4_15088 Corchorus olitorius HOM05D000371 ORTHO05D008019 1.1e-24 118.6 253 33.6
Nitab4.5_0001495g0120 Nicotiana tabacum HOM05D000371 ORTHO05D008019 1.8e-24 117.9 139 50.4
CBR_g11111 Chara braunii HOM05D000371 ORTHO05D008019 2.4e-24 117.5 159 50.3
Nn2g11167 Nelumbo nucifera HOM05D000371 ORTHO05D008019 2.2e-22 110.9 191 37.2
unitig_70.g32541 Utricularia gibba HOM05D000371 ORTHO05D008019 4.7e-20 103.2 193 35.2
HanXRQChr04g0123541 Helianthus annuus HOM05D000371 ORTHO05D008019 7.7e-15 85.9 57 71.9
HanXRQChr08g0222821 Helianthus annuus HOM05D000371 ORTHO05D008019 1.9e-13 81.3 45 80.0
HanXRQChr06g0164201 Helianthus annuus HOM05D000371 ORTHO05D008019 4.2e-13 80.1 46 78.3
EL10As1g23098 Beta vulgaris HOM05D000371 ORTHO05D008019 6.3e-09 66.2 51 56.9
VMungo1383G2180 Vigna mungo HOM05D000371 ORTHO05D437807 4.1e-08 63.5 38 73.7
EL10Ac5g11814 Beta vulgaris HOM05D000371 ORTHO05D026989 1.2e-07 62.0 38 68.4
HanXRQChr02g0050401 Helianthus annuus HOM05D000371 ORTHO05D008019 2.7e-07 60.8 44 72.7
HanXRQChr14g0433881 Helianthus annuus HOM05D000371 ORTHO05D008019 7.7e-07 59.3 44 65.9
Ciclev10031088m.g Citrus clementina HOM05D000371 ORTHO05D001484 1.0e-06 58.9 49 53.1
ClCG05G007100 Citrullus lanatus HOM05D000371 ORTHO05D001484 1.7e-06 58.2 49 53.1
Atru.chr6.1453 Acer truncatum HOM05D000371 ORTHO05D001484 2.2e-06 57.8 49 53.1
Medtr8g080980 Medicago truncatula HOM05D000371 ORTHO05D001484 2.2e-06 57.8 49 53.1
Zm00001eb087350 Zea mays HOM05D000371 ORTHO05D001484 2.2e-06 57.8 49 53.1
Aa31sc18G140 Aethionema arabicum HOM05D000371 ORTHO05D001484 2.9e-06 57.4 49 51.0
BcaC01g03234 Brassica carinata HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
A03p44140 Brassica napus HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
C03p54520 Brassica napus HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
BolC3t17738H Brassica oleracea HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
BraA03t13544Z Brassica rapa HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
Thhalv10002468m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
Sp3g22860 Schrenkiella parvula HOM05D000371 ORTHO05D001484 2.9e-06 57.4 61 47.5
Zm00001eb241230 Zea mays HOM05D000371 ORTHO05D001484 2.9e-06 57.4 66 43.9
MD10G1156300 Malus domestica HOM05D000371 ORTHO05D001484 3.8e-06 57.0 126 33.3
Os08g0525600 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 3.8e-06 57.0 49 51.0
Actinidia23376 Actinidia chinensis HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 53.1
Ah.08g218900 Amaranthus hybridus HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
AT5G48570 Arabidopsis thaliana HOM05D000371 ORTHO05D001484 5.0e-06 56.6 104 35.6
BcaB08g34446 Brassica carinata HOM05D000371 ORTHO05D001484 5.0e-06 56.6 61 47.5
CARHR183440 Cardamine hirsuta HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
Cre09.g398067 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D001484 5.0e-06 56.6 131 34.4
Migut.D02482 Erythranthe guttata HOM05D000371 ORTHO05D001484 5.0e-06 56.6 52 50.0
Thhalv10003906m.g Eutrema salsugineum HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
Sp2g18930 Schrenkiella parvula HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
THA.LOC104808804 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
THA.LOC104821660 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 5.0e-06 56.6 49 51.0
AL3G41150 Arabidopsis lyrata HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
EL10Ac7g17958 Beta vulgaris HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
BcaC01g03227 Brassica carinata HOM05D000371 ORTHO05D032339 6.5e-06 56.2 61 45.9
C03p54550 Brassica napus HOM05D000371 ORTHO05D032339 6.5e-06 56.2 61 45.9
BolC3t17742H Brassica oleracea HOM05D000371 ORTHO05D032339 6.5e-06 56.2 61 45.9
BraA06t26822Z Brassica rapa HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
Carub.0003s2563 Capsella rubella HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
Cpa.g.sc8.107 Carica papaya HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
Ca_18008_v3 Cicer arietinum L. HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
MELO3C006783.2 Cucumis melo HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 53.1
CsaV3_3G015840 Cucumis sativus L. HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 53.1
ECA247G3328 Erigeron canadensis HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
Potri.002G248300 Populus trichocarpa HOM05D000371 ORTHO05D001484 6.5e-06 56.2 99 38.4
Potri.014G149400 Populus trichocarpa HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 53.1
Sabra14G0112600 Salix brachista HOM05D000371 ORTHO05D001484 6.5e-06 56.2 69 44.9
THA.LOC104818983 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 6.5e-06 56.2 49 51.0
AL8G21550 Arabidopsis lyrata HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
BcaB08g34451 Brassica carinata HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
BcaC06g30780 Brassica carinata HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
Psat7g076200 Pisum sativum HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
THA.LOC104822478 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
TPR.G16458 Trifolium pratense HOM05D000371 ORTHO05D001484 8.5e-06 55.8 52 50.0
TWI75G0156 Tripterygium wilfordii HOM05D000371 ORTHO05D001484 8.5e-06 55.8 49 51.0
unitig_0.g410 Utricularia gibba HOM05D000371 ORTHO05D001484 8.5e-06 55.8 52 50.0


User provided reference genes

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