Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0134100 Rhododendron simsii HOM05D000502 ORTHO05D000356 8.3e-94 347.1 177 100.0
Rhsim07G0164100 Rhododendron simsii HOM05D008549 ORTHO05D010237 2.2e-14 83.2 179 35.8
TWI75G0054 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.7e-09 65.9 50 64.0
TWI75G1323 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.7e-09 65.9 50 64.0
TWI75G1727 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.7e-09 65.9 50 64.0
CSS0032899 Camellia sinensis var. sinensis HOM05D000502 ORTHO05D000356 8.2e-09 64.7 50 58.0
Solyc04g005040.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 8.2e-09 64.7 51 56.9
Sopen04g001060 Solanum pennellii HOM05D000502 ORTHO05D000356 8.2e-09 64.7 51 56.9
PGSC0003DMG400001924 Solanum tuberosum HOM05D000502 ORTHO05D000356 8.2e-09 64.7 51 56.9
Actinidia14997 Actinidia chinensis HOM05D000502 ORTHO05D000356 1.4e-08 63.9 51 58.8
Solyc04g005050.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 1.4e-08 63.9 49 59.2
Sopen04g001070 Solanum pennellii HOM05D000502 ORTHO05D000356 1.4e-08 63.9 49 59.2
PGSC0003DMG400001923 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.4e-08 63.9 49 59.2
GSVIVG01020151001 Vitis vinifera HOM05D000502 ORTHO05D000356 1.8e-08 63.5 55 50.9
Potri.015G103900 Populus trichocarpa HOM05D000502 ORTHO05D000356 2.4e-08 63.2 50 58.0
Hma1.2p1_0160F.1_g070550 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 3.1e-08 62.8 50 58.0
Rhsim12G0125800 Rhododendron simsii HOM05D000502 ORTHO05D000356 3.1e-08 62.8 101 35.6
CAN.G58.25 Capsicum annuum HOM05D000502 ORTHO05D000356 4.1e-08 62.4 51 54.9
Dinv24913 Davidia involucrata HOM05D000502 ORTHO05D000356 5.3e-08 62.0 61 45.9
Potri.012G104600 Populus trichocarpa HOM05D000502 ORTHO05D000356 6.9e-08 61.6 49 57.1
DCAR_026562 Daucus carota HOM05D000502 ORTHO05D000356 9.0e-08 61.2 56 48.2
Prupe.1G261000 Prunus persica HOM05D000502 ORTHO05D000356 9.0e-08 61.2 50 56.0
QL03p067186 Quercus lobata HOM05D000502 ORTHO05D000356 1.2e-07 60.8 49 55.1
RcHm_v2.0_Chr4g0444791 Rosa chinensis HOM05D000502 ORTHO05D000356 1.2e-07 60.8 50 54.0
Sabra15G0123700 Salix brachista HOM05D000502 ORTHO05D000356 1.2e-07 60.8 50 56.0
TWI18G1226 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 1.2e-07 60.8 50 60.0
CAN.G21.23 Capsicum annuum HOM05D000502 ORTHO05D000356 1.5e-07 60.5 49 57.1
MD16G1085000 Malus domestica HOM05D000502 ORTHO05D000356 1.5e-07 60.5 80 40.0
Nitab4.5_0000034g0110 Nicotiana tabacum HOM05D000502 ORTHO05D000356 1.5e-07 60.5 48 58.3
Duzib251G0396 Durio zibethinus HOM05D000502 ORTHO05D000356 2.0e-07 60.1 49 53.1
Medtr8g062770 Medicago truncatula HOM05D000502 ORTHO05D000356 2.0e-07 60.1 51 52.9
TPR.G17312 Trifolium pratense HOM05D000502 ORTHO05D000356 2.0e-07 60.1 51 56.9
MD13G1085700 Malus domestica HOM05D000502 ORTHO05D000356 2.6e-07 59.7 80 38.8
Medtr5g036410 Medicago truncatula HOM05D000502 ORTHO05D000356 2.6e-07 59.7 51 54.9
Nitab4.5_0003786g0020 Nicotiana tabacum HOM05D000502 ORTHO05D000356 2.6e-07 59.7 48 58.3
CANSAT01G0382 Cannabis sativa HOM05D000502 ORTHO05D000356 3.4e-07 59.3 62 53.2
CiPaw.06G075900 Carya illinoinensis HOM05D000502 ORTHO05D000356 3.4e-07 59.3 49 53.1
HanXRQChr17g0570141 Helianthus annuus HOM05D000502 ORTHO05D000356 3.4e-07 59.3 49 53.1
Sp2g04640 Schrenkiella parvula HOM05D000502 ORTHO05D000356 3.4e-07 59.3 49 57.1
Psat2g112760 Pisum sativum HOM05D000502 ORTHO05D000356 4.5e-07 58.9 51 52.9
Gohir.D05G321500 Gossypium hirsutum HOM05D000502 ORTHO05D000356 5.9e-07 58.5 81 38.3
BcaB07g31192 Brassica carinata HOM05D000502 ORTHO05D000356 7.7e-07 58.2 51 54.9
FAN17G2703 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.7e-07 58.2 50 50.0
Nn4g22921 Nelumbo nucifera HOM05D000502 ORTHO05D000356 7.7e-07 58.2 49 53.1
PGR119G0490 Punica granatum HOM05D000502 ORTHO05D000356 7.7e-07 58.2 48 56.2
Ca_27510_v3 Cicer arietinum L. HOM05D000502 ORTHO05D000356 1.0e-06 57.8 51 52.9
FvH4_4g35180 Fragaria vesca HOM05D000502 ORTHO05D000356 1.0e-06 57.8 57 45.6
FAN07G1343 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.0e-06 57.8 53 47.2
FAN12G3189 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.0e-06 57.8 57 45.6
FAN22G0541 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.0e-06 57.8 57 45.6
Gorai.009G345000 Gossypium raimondii HOM05D000502 ORTHO05D000356 1.0e-06 57.8 81 38.3
Lj6P799T41 Lonicera japonica HOM05D000502 ORTHO05D000356 1.0e-06 57.8 49 55.1
Atru.chr11.1945 Acer truncatum HOM05D000502 ORTHO05D000356 1.3e-06 57.4 49 57.1
Ciclev10031870m.g Citrus clementina HOM05D000502 ORTHO05D000356 1.3e-06 57.4 78 42.3
Manes.01G195600 Manihot esculenta HOM05D000502 ORTHO05D000356 1.3e-06 57.4 50 52.0
Sabra12G0077000 Salix brachista HOM05D000502 ORTHO05D000356 1.3e-06 57.4 49 55.1
VMungo0251G0998 Vigna mungo HOM05D000502 ORTHO05D000356 1.3e-06 57.4 51 52.9
Cc11_g14130 Coffea canephora HOM05D000502 ORTHO05D000356 1.7e-06 57.0 69 47.8
Nn3g17027 Nelumbo nucifera HOM05D000502 ORTHO05D000356 2.2e-06 56.6 58 50.0
Peaxi162Scf00134g00172 Petunia axillaris HOM05D000502 ORTHO05D000356 2.2e-06 56.6 48 52.1
TAR629G2860 Trochodendron aralioides HOM05D000502 ORTHO05D000356 2.2e-06 56.6 50 54.0
COL.COLO4_37882 Corchorus olitorius HOM05D000502 ORTHO05D000356 2.9e-06 56.2 49 49.0
Thecc.02G240500 Theobroma cacao HOM05D000502 ORTHO05D000356 3.8e-06 55.8 50 50.0
Haze_12126 Corylus avellana HOM05D000502 ORTHO05D000356 5.0e-06 55.5 49 49.0
Psat4g128200 Pisum sativum HOM05D000502 ORTHO05D000356 5.0e-06 55.5 51 51.0
Duzib268G1852 Durio zibethinus HOM05D000502 ORTHO05D000356 6.5e-06 55.1 49 51.0
Glyma.02G027800 Glycine max HOM05D000502 ORTHO05D000356 6.5e-06 55.1 53 49.1
Gohir.A05G319300 Gossypium hirsutum HOM05D000502 ORTHO05D000356 6.5e-06 55.1 81 37.0
Lsat_1_v5_gn_4_6101 Lactuca sativa HOM05D000502 ORTHO05D000356 6.5e-06 55.1 48 50.0
Nn3g17024 Nelumbo nucifera HOM05D000502 ORTHO05D000356 6.5e-06 55.1 48 52.1
Nitab4.5_0000257g0040 Nicotiana tabacum HOM05D000502 ORTHO05D000356 6.5e-06 55.1 84 36.9
PSO170G2276 Papaver somniferum HOM05D000502 ORTHO05D000356 6.5e-06 55.1 63 41.3
SalBow8G5169 Salvia bowleyana HOM05D000502 ORTHO05D000356 6.5e-06 55.1 46 56.5
PGSC0003DMG400041373 Solanum tuberosum HOM05D000502 ORTHO05D000356 6.5e-06 55.1 87 34.5
AL2G16780 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 8.5e-06 54.7 48 52.1
AT1G59970 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 8.5e-06 54.7 48 52.1
BcaC04g22202 Brassica carinata HOM05D000502 ORTHO05D000356 8.5e-06 54.7 50 54.0
BraA09t37414Z Brassica rapa HOM05D000502 ORTHO05D000356 8.5e-06 54.7 50 54.0
HanXRQChr03g0087781 Helianthus annuus HOM05D000502 ORTHO05D000356 8.5e-06 54.7 50 46.0
VMungo1215G1999 Vigna mungo HOM05D000502 ORTHO05D000356 8.5e-06 54.7 48 54.2


User provided reference genes

Program Settings