Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 3483.0 1764 100.0
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 0.0e+00 2659.8 2085 70.7
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 2170.6 1792 66.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 2108.6 1801 64.7
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1781.5 1802 57.3
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1292.7 1706 45.6
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1279.2 1845 43.7
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1275.8 1830 44.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1251.9 1757 46.0
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 0.0e+00 1212.2 1397 50.9
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1211.4 1800 42.6
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1197.2 1823 42.1
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1192.9 1817 42.8
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 0.0e+00 1184.5 1702 43.8
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1184.1 1825 42.2
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1182.5 1823 41.5
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 0.0e+00 1181.8 1708 43.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1176.8 1805 42.0
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1172.5 1816 42.3
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1165.2 1622 44.6
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1149.0 1799 41.4
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 1145.6 1773 42.1
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1139.0 1809 41.5
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1132.5 1881 40.2
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 1130.9 1777 41.8
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1129.8 1821 41.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1125.2 1820 41.1
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1123.6 1839 41.3
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1123.2 1822 41.6
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 1122.8 1791 41.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1115.1 1826 41.0
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1109.4 1821 41.0
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1108.2 1766 41.5
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 1101.7 1763 42.3
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 0.0e+00 1098.6 1882 40.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1090.9 1812 41.0
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1083.9 1811 40.8
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1080.1 1807 40.8
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.1e-310 1070.8 1812 40.2
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 2.9e-300 1036.2 1786 38.7
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.2e-293 1014.2 1779 38.7
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 5.0e-292 1008.8 1461 42.6
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.7e-287 993.8 1822 38.4
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.2e-287 993.4 1712 37.9
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.2e-287 993.4 1712 37.9
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 1.6e-285 987.3 1818 38.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 3.5e-285 986.1 1812 38.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 6.6e-284 981.9 1797 38.0
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 6.8e-281 971.8 1807 38.1
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.9e-279 966.5 1808 38.0
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 8.3e-279 964.9 1757 38.2
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.4e-278 962.2 1803 37.2
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 7.8e-277 958.4 1801 37.1
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.4e-273 947.6 1831 37.8
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 5.2e-273 945.7 1812 37.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 1.5e-272 944.1 1813 37.7
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 3.4e-272 943.0 1782 37.5
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 4.9e-271 939.1 1301 44.6
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.6e-269 934.1 1269 44.5
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 3.9e-268 929.5 1852 36.6
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.5e-267 927.5 1275 43.5
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.5e-267 926.8 1759 36.0
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.4e-265 921.0 1822 36.3
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.4e-265 921.0 1859 36.8
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 3.1e-265 919.8 1825 36.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 7.1e-262 908.7 1273 42.5
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.6e-261 907.5 1751 37.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 3.3e-259 899.8 1789 36.9
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 4.4e-256 889.4 1787 36.9
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.3e-255 887.9 1317 40.3
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 2.3e-244 850.5 1783 35.4
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 4.3e-243 846.3 1821 36.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.1e-236 822.8 1552 38.4
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 9.4e-214 748.8 1780 33.9
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 2.3e-212 744.2 1797 34.1
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 5.1e-212 743.0 1381 39.7
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.0e-211 741.1 908 44.5
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 3.3e-211 740.3 1768 34.8
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 4.4e-211 740.0 809 49.4
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.7e-210 738.0 1782 35.0
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 7.0e-209 732.6 1787 34.0
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 9.1e-209 732.3 1800 34.4
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 5.9e-208 729.6 1796 33.8
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 5.0e-207 726.5 1782 34.0
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 8.5e-207 725.7 698 53.7
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.5e-206 724.9 1786 33.8
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 8.0e-205 719.2 1296 38.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 8.8e-204 715.7 1282 38.2
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 5.4e-193 679.9 687 51.5
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 6.1e-189 666.4 1861 31.4
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 6.8e-188 662.9 639 54.8
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.1e-185 655.6 747 45.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.4e-177 628.6 1784 29.7
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 8.6e-167 592.8 1268 33.4
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.2e-165 589.0 1708 30.3
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 3.3e-134 484.6 914 34.5
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 7.6e-131 473.4 1140 34.8
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.6e-118 429.9 437 51.7
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.5e-115 422.5 837 39.5
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 7.2e-113 413.7 649 41.0
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.3e-106 392.9 675 38.8
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.7e-101 375.9 699 38.8
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 3.3e-86 325.1 1252 29.4
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.2e-83 316.6 892 29.6
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 6.5e-82 310.8 460 37.8
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.4e-76 292.4 546 33.5
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.2e-72 280.0 628 34.9
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 1.2e-64 253.4 829 27.0
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.3e-61 243.4 739 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.1e-57 230.3 644 29.0
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 6.6e-50 204.5 1241 23.9
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.8e-48 199.1 711 30.9
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 5.4e-36 158.3 308 36.4
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 2.4e-31 142.9 420 32.6
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 3.1e-31 142.5 137 46.0
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.8e-29 135.6 128 47.7
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 7.1e-28 131.3 305 35.1
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 3.9e-26 125.6 363 32.0
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.1e-18 98.6 376 29.5
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.2e-14 87.4 288 33.0
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 2.0e-14 86.7 59 76.3
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 5.8e-14 85.1 105 45.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 2.4e-12 79.7 133 36.1
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 3.2e-12 79.3 222 34.2
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 1.2e-11 77.4 327 29.4
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 5.6e-09 68.6 93 46.2


User provided reference genes

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