Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.7e-124 447.2 233 100.0
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 8.9e-104 380.6 230 87.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 5.2e-96 354.8 217 81.6
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 9.8e-95 350.5 223 79.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.6e-92 343.2 213 77.9
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.5e-92 342.0 213 77.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.3e-91 340.1 214 78.5
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.7e-91 339.7 214 79.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.7e-91 339.7 213 78.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.0e-91 339.0 216 78.7
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.3e-90 335.1 214 77.6
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 5.6e-90 334.7 211 78.2
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.8e-89 332.4 214 77.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.6e-89 332.0 214 78.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.7e-89 331.6 216 76.9
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 6.2e-89 331.3 208 78.4
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 6.2e-89 331.3 215 79.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 8.1e-89 330.9 213 77.0
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.4e-88 330.1 215 76.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.8e-88 329.7 214 75.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.8e-88 329.7 214 76.2
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.8e-88 329.7 233 73.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.8e-88 329.7 213 76.5
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.3e-88 329.3 213 76.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.1e-88 328.9 216 76.4
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.0e-88 328.6 215 78.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.2e-88 328.2 218 75.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.2e-87 327.0 213 75.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.2e-87 327.0 214 75.7
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.4e-87 325.1 236 71.6
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.4e-87 325.1 236 71.6
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.4e-87 325.1 216 74.5
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 9.8e-87 323.9 236 71.2
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.8e-87 323.9 236 71.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 9.8e-87 323.9 215 76.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 9.8e-87 323.9 205 77.1
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 9.8e-87 323.9 230 71.7
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-86 323.2 216 73.6
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.2e-86 322.8 217 76.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.9e-86 322.4 213 74.6
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.9e-86 322.4 215 75.3
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.7e-86 322.0 217 75.1
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 3.7e-86 322.0 214 75.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.9e-86 321.6 236 70.8
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.9e-86 321.6 216 74.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.3e-86 320.9 213 74.2
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.3e-86 320.9 213 74.2
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 8.3e-86 320.9 236 70.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-85 320.5 220 74.5
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.4e-85 320.1 217 75.6
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.9e-85 319.7 214 74.8
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.2e-85 318.9 213 75.6
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 4.1e-85 318.5 216 74.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.4e-85 318.2 232 72.8
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.4e-85 318.2 232 72.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.1e-84 316.2 216 74.1
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.5e-84 315.5 216 73.6
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 4.6e-84 315.1 209 75.1
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.0e-83 313.9 213 73.2
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.0e-83 313.9 213 72.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.0e-83 313.9 213 71.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.7e-83 313.2 207 74.9
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.0e-83 312.4 221 74.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.1e-83 311.6 211 75.8
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.1e-83 311.6 211 75.8
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 5.1e-83 311.6 213 72.3
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 6.6e-83 311.2 203 75.4
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 8.6e-83 310.8 203 75.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 8.6e-83 310.8 205 74.1
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.5e-82 309.3 209 73.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 5.6e-82 308.1 213 73.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 9.5e-82 307.4 216 72.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.6e-81 306.6 214 71.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 2.8e-81 305.8 235 66.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-80 303.9 211 73.5
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.8e-80 303.1 215 72.1
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.1e-80 302.4 207 70.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 3.1e-80 302.4 237 71.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 8.9e-80 300.8 219 69.9
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 8.9e-80 300.8 220 69.5
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 204 73.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.9e-79 297.4 200 72.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.4e-77 292.7 225 71.6
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 3.2e-77 292.4 210 70.5
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.4e-77 291.6 201 74.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.5e-76 288.9 212 68.4
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.0e-75 287.3 207 72.9
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 8.6e-75 284.3 209 73.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.3e-74 282.3 209 72.7
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.3e-74 282.0 200 69.5
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.7e-73 278.5 203 69.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.1e-73 277.7 198 69.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.8e-72 276.6 211 68.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-72 275.8 212 67.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 6.9e-72 274.6 214 65.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.9e-72 274.6 212 67.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 8.9e-72 274.2 207 66.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 8.9e-72 274.2 205 68.8
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.5e-71 273.5 214 66.4
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.0e-71 273.1 211 67.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.6e-71 272.7 225 62.7
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.4e-71 271.9 211 67.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 5.8e-71 271.6 214 66.4
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.8e-71 271.6 214 66.4
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 7.6e-71 271.2 214 66.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 7.6e-71 271.2 214 65.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 7.6e-71 271.2 214 65.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.6e-71 271.2 211 64.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.9e-71 270.8 211 66.8
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-70 270.4 214 66.8
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-70 270.4 214 66.8
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-70 270.4 214 65.9
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-70 270.4 214 66.8
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 4.9e-70 268.5 214 66.4
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 6.4e-70 268.1 215 65.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.9e-69 266.5 213 64.8
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.4e-69 266.2 217 67.3
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.2e-69 265.8 200 67.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 4.2e-69 265.4 214 66.8
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 9.3e-69 264.2 207 64.7
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.7e-67 257.7 204 64.7
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.3e-66 255.8 142 85.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.6e-65 252.3 204 64.2
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.0e-64 248.8 231 61.5
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 9.0e-64 247.7 199 62.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.4e-61 238.4 207 60.9
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.1e-58 230.7 202 56.9
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.3e-58 229.2 171 68.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-55 220.7 174 66.7
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 5.1e-51 205.3 171 62.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.7e-49 199.1 209 54.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 6.2e-49 198.4 123 78.9
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.2e-46 189.9 120 71.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 9.3e-45 184.5 131 73.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.7e-44 183.0 210 51.4
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.3e-43 180.6 108 76.9
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.2e-41 173.3 101 79.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 6.9e-40 168.3 104 76.0
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.5e-21 105.5 62 82.3
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 8.8e-19 98.2 93 57.0
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.8e-06 56.2 74 33.8
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.8e-06 56.2 74 33.8
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.8e-06 56.2 149 26.8


User provided reference genes

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