Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 2.1e-308 1061.6 557 100.0
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 5.9e-154 548.5 539 60.7
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.7e-121 440.7 523 52.2
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.4e-86 324.7 516 43.6
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 7.3e-80 302.4 521 41.7
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 8.1e-79 298.9 516 39.1
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 2.6e-77 293.9 530 41.1
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.2e-76 290.8 539 38.8
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.9e-75 287.7 518 39.8
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 4.2e-75 286.6 559 42.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 7.9e-74 282.3 518 39.6
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.3e-73 281.6 518 38.4
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.5e-72 277.3 526 41.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 4.3e-72 276.6 525 39.0
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.1e-70 271.9 525 37.9
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.5e-69 266.5 538 38.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.8e-69 266.2 526 38.0
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.7e-68 264.6 526 37.8
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.7e-68 264.6 535 38.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.2e-68 264.2 519 36.8
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 4.9e-68 263.1 535 37.8
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.1e-67 261.9 525 40.0
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.9e-67 261.2 518 37.6
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 3.2e-67 260.4 502 39.8
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.2e-66 258.5 534 40.1
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.6e-66 258.1 526 37.8
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.1e-66 257.7 520 37.7
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.3e-65 255.0 541 35.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.8e-65 254.6 520 36.9
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 3.0e-65 253.8 531 38.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.1e-64 251.9 529 37.2
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.5e-64 251.5 534 37.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 5.6e-64 249.6 531 38.2
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 9.6e-64 248.8 523 37.3
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-63 248.4 531 37.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 8.1e-63 245.7 560 36.4
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.1e-62 245.4 613 33.4
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 1.1e-62 245.4 533 37.3
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 1.2e-61 241.9 554 35.4
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 7.6e-61 239.2 543 35.7
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 7.6e-61 239.2 547 35.6
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.0e-60 238.8 554 35.6
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.2e-59 233.4 542 33.4
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 2.1e-58 231.1 485 35.3
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 7.9e-58 229.2 174 67.8
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 2.3e-57 227.6 519 38.3
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 3.0e-57 227.3 490 36.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 8.7e-57 225.7 524 37.0
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.9e-56 224.6 535 35.1
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.5e-56 224.2 542 33.9
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 5.7e-56 223.0 307 49.5
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 5.7e-56 223.0 521 36.5
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 9.6e-56 222.2 528 35.2
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.1e-54 217.2 521 32.8
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 5.3e-54 216.5 546 31.9
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.2e-53 215.3 526 34.4
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.4e-53 213.8 523 34.2
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 7.6e-53 212.6 551 35.4
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 8.5e-52 209.1 543 33.9
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.9e-51 208.0 545 33.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 3.2e-51 207.2 536 33.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 4.2e-51 206.8 528 33.5
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 4.2e-51 206.8 518 33.8
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 7.2e-51 206.1 523 34.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.2e-51 206.1 576 31.4
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.6e-50 204.9 517 32.3
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 6.1e-50 203.0 518 34.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.0e-49 202.2 521 32.2
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.0e-49 200.7 518 33.0
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 6.7e-49 199.5 535 33.3
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.7e-49 199.5 540 34.8
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.7e-49 199.1 537 32.8
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.1e-48 198.7 536 33.4
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 2.5e-48 197.6 532 32.1
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.7e-47 193.7 533 33.2
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 8.2e-47 192.6 523 31.7
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.0e-45 188.0 483 32.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 5.9e-45 186.4 533 31.0
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 7.7e-45 186.0 567 31.6
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 6.7e-41 172.9 554 31.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 1.1e-40 172.2 559 31.5
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.5e-40 171.8 527 29.6
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.7e-39 168.3 530 29.8
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.4e-38 165.2 551 30.1
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.8e-38 164.9 274 41.2
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.1e-38 164.1 539 31.2
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 4.1e-38 163.7 533 30.6
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.1e-38 162.5 307 40.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.3e-36 158.7 567 30.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 5.0e-36 156.8 532 29.9
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 4.2e-35 153.7 573 29.1
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 4.2e-35 153.7 106 67.9
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 2.1e-34 151.4 122 65.6
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 3.6e-34 150.6 533 29.8
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 7.9e-34 149.4 132 61.4
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.0e-33 149.1 531 29.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.0e-33 149.1 531 29.2
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.0e-33 149.1 561 29.2
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.5e-32 145.2 534 29.6
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 8.2e-31 139.4 517 29.8
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.4e-30 138.7 536 30.8
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 4.5e-29 133.7 536 26.7
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.8e-28 130.6 247 39.3
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.5e-27 128.6 528 28.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 2.5e-27 127.9 525 29.1
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 8.0e-26 122.9 483 28.6
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.0e-25 122.5 153 48.4
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.6e-24 117.9 108 57.4
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 4.1e-22 110.5 478 27.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 9.1e-22 109.4 137 46.7
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 4.5e-21 107.1 113 46.9
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 1.9e-19 101.7 127 50.4
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 7.2e-19 99.8 170 38.8
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 9.4e-19 99.4 168 38.1
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.8e-17 95.1 155 42.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.3e-15 89.0 214 33.6
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 1.7e-12 78.6 90 47.8
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 1.7e-12 78.6 309 29.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.2e-10 72.4 187 28.3
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.4e-09 68.9 84 38.1
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 4.0e-09 67.4 173 27.7
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 5.2e-09 67.0 235 28.5
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.2e-09 67.0 95 41.1
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 8.8e-09 66.2 169 30.8
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.2e-08 65.9 87 35.6
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.2e-08 65.9 101 36.6
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.5e-08 65.5 243 25.9
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.0e-08 65.1 94 39.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.0e-08 65.1 95 40.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 3.4e-08 64.3 170 27.1
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 4.4e-08 63.9 119 31.1
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 4.4e-08 63.9 68 42.6
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 5.7e-08 63.5 95 38.9
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 5.7e-08 63.5 208 28.8
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 9.8e-08 62.8 81 37.0
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.3e-07 62.4 203 27.1
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 3.7e-07 60.8 80 38.8
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.9e-07 60.5 41 75.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 4.9e-07 60.5 106 31.1
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 4.9e-07 60.5 278 26.6
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 4.9e-07 60.5 68 41.2
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 6.3e-07 60.1 252 25.8
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 8.3e-07 59.7 58 43.1
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.4e-06 58.9 53 52.8
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 1.4e-06 58.9 211 28.4
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.4e-06 58.9 123 34.1
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.8e-06 58.5 170 27.1
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.8e-06 58.5 77 35.1
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 2.4e-06 58.2 137 30.7
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 4.1e-06 57.4 265 26.0
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.1e-06 57.4 171 28.7
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.1e-06 57.4 194 25.8
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.1e-06 57.4 56 42.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 4.1e-06 57.4 87 28.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 5.4e-06 57.0 92 30.4
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.4e-06 57.0 259 24.3
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 7.0e-06 56.6 86 30.2
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 7.0e-06 56.6 78 34.6
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 9.2e-06 56.2 93 34.4
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 9.2e-06 56.2 87 27.6


User provided reference genes

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