Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 2.2e-108 395.6 189 100.0
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 1.1e-32 144.1 154 50.6
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 9.6e-32 141.0 75 92.0
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 2.2e-28 129.8 106 56.6
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 2.9e-28 129.4 106 53.8
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 3.8e-28 129.0 108 56.5
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 2.4e-27 126.3 105 57.1
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 3.2e-27 125.9 125 54.4
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 4.2e-27 125.6 111 52.3
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.2e-26 124.0 88 62.5
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 2.7e-26 122.9 140 47.9
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 4.6e-26 122.1 106 50.9
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 7.9e-26 121.3 104 55.8
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 2.3e-25 119.8 95 63.2
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 1.3e-23 114.0 112 53.6
Medtr7g070320 Medicago truncatula HOM05D000475 ORTHO05D000343 3.7e-23 112.5 126 46.8
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 3.7e-23 112.5 136 46.3
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 1.1e-22 110.9 108 50.9
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 1.4e-22 110.5 145 40.7
Hma1.2p1_0501F.1_g167350 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 3.1e-22 109.4 75 66.7
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 6.9e-22 108.2 105 54.3
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 6.9e-22 108.2 89 59.6
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 1.2e-21 107.5 138 40.6
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 2.6e-21 106.3 156 41.0
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 7.6e-21 104.8 89 49.4
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 7.6e-21 104.8 77 66.2
Dinv35407 Davidia involucrata HOM05D000475 ORTHO05D000343 9.9e-21 104.4 73 67.1
Actinidia11548 Actinidia chinensis HOM05D000475 ORTHO05D000343 2.9e-20 102.8 73 69.9
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 3.8e-20 102.4 150 43.3
Phvul.010G010600 Phaseolus vulgaris HOM05D000475 ORTHO05D011666 4.9e-20 102.1 77 58.4
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 6.4e-20 101.7 148 39.9
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 6.4e-20 101.7 111 46.8
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 7.1e-19 98.2 111 45.0
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 9.3e-19 97.8 111 46.8
TPR.G25494 Trifolium pratense HOM05D000475 ORTHO05D011666 9.3e-19 97.8 122 42.6
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 1.6e-18 97.1 142 36.6
Sed0008589 Sechium edule HOM05D000475 ORTHO05D011666 1.6e-18 97.1 105 42.9
TPR.G40566 Trifolium pratense HOM05D000475 ORTHO05D011666 1.6e-18 97.1 123 41.5
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 2.7e-18 96.3 141 39.0
CAN.G1288.8 Capsicum annuum HOM05D000475 ORTHO05D000343 4.6e-18 95.5 112 46.4
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 6.0e-18 95.1 74 62.2
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 3.0e-17 92.8 100 43.0
Duzib128G1179 Durio zibethinus HOM05D000475 ORTHO05D000343 1.1e-16 90.9 72 62.5
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 1.1e-16 90.9 112 42.9
Cc06_g00720 Coffea canephora HOM05D000475 ORTHO05D000343 1.5e-16 90.5 71 60.6
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 1.5e-16 90.5 99 45.5
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 2.5e-16 89.7 109 45.9
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 3.3e-16 89.4 72 61.1
Duzib093G0789 Durio zibethinus HOM05D000475 ORTHO05D000343 4.3e-16 89.0 72 59.7
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 7.4e-16 88.2 106 42.5
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 9.6e-16 87.8 93 46.2
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 1.3e-15 87.4 56 71.4
Lsat_1_v5_gn_2_125761 Lactuca sativa HOM05D000475 ORTHO05D000343 1.6e-15 87.0 133 39.1
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 1.6e-15 87.0 105 42.9
Atru.chr8.2340 Acer truncatum HOM05D000475 ORTHO05D000343 2.1e-15 86.7 80 52.5
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 2.1e-15 86.7 99 44.4
Dinv21798 Davidia involucrata HOM05D000475 ORTHO05D000343 2.1e-15 86.7 73 53.4
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 2.8e-15 86.3 100 46.0
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 2.8e-15 86.3 69 62.3
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 3.7e-15 85.9 100 45.0
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 3.7e-15 85.9 100 45.0
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 4.8e-15 85.5 108 39.8
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 4.8e-15 85.5 142 36.6
Oeu038716.1 Olea europaea HOM05D000475 ORTHO05D000343 4.8e-15 85.5 66 63.6
TAR633G1711 Trochodendron aralioides HOM05D000475 ORTHO05D000343 4.8e-15 85.5 71 56.3
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 1.1e-14 84.3 100 44.0
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 1.1e-14 84.3 100 44.0
PGR031G2393 Punica granatum HOM05D000475 ORTHO05D000343 1.1e-14 84.3 72 55.6
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 1.4e-14 84.0 79 54.4
arahy.Tifrunner.gnm1.ann1.LAF8WM Arachis hypogaea HOM05D000475 ORTHO05D000343 1.8e-14 83.6 71 53.5
COL.COLO4_14448 Corchorus olitorius HOM05D000475 ORTHO05D000343 1.8e-14 83.6 72 54.2
Lj2A66G60 Lonicera japonica HOM05D000475 ORTHO05D000343 1.8e-14 83.6 91 49.5
PGSC0003DMG400011621 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.8e-14 83.6 69 59.4
CiPaw.09G215600 Carya illinoinensis HOM05D000475 ORTHO05D000343 3.1e-14 82.8 74 52.7
Gohir.A09G168100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 5.3e-14 82.0 72 55.6
Gohir.D09G164100 Gossypium hirsutum HOM05D000475 ORTHO05D000343 5.3e-14 82.0 72 55.6
GSVIVG01030266001 Vitis vinifera HOM05D000475 ORTHO05D000343 5.3e-14 82.0 74 54.1
Nitab4.5_0001703g0060 Nicotiana tabacum HOM05D000475 ORTHO05D000343 6.9e-14 81.6 75 56.0
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 9.0e-14 81.3 131 39.7
Haze_21089 Corylus avellana HOM05D000475 ORTHO05D000343 9.0e-14 81.3 69 59.4
CAN.G1363.5 Capsicum annuum HOM05D000222 ORTHO05D011666 1.2e-13 80.9 60 65.0
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 1.2e-13 80.9 64 64.1
Gorai.006G185700 Gossypium raimondii HOM05D000475 ORTHO05D000343 1.5e-13 80.5 72 54.2
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.5e-13 80.5 168 30.4
TWI77G0406 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.6e-13 79.7 73 52.1
Ah.12g059110 Amaranthus hybridus HOM05D000475 ORTHO05D000343 3.4e-13 79.3 69 55.1
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 3.4e-13 79.3 62 53.2
PSO478G1812 Papaver somniferum HOM05D000475 ORTHO05D000343 3.4e-13 79.3 79 49.4
Nitab4.5_0001226g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 4.5e-13 79.0 71 56.3
Peaxi162Scf00744g00336 Petunia axillaris HOM05D000475 ORTHO05D000343 5.8e-13 78.6 82 56.1
SGA_v2.0_scaffold240G44069 Striga asiatica HOM05D000475 ORTHO05D000343 5.8e-13 78.6 68 52.9
Cpa.g.sc5.240 Carica papaya HOM05D000475 ORTHO05D000343 1.0e-12 77.8 69 55.1
Nitab4.5_0004057g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.0e-12 77.8 75 54.7
CAN.G756.29 Capsicum annuum HOM05D000222 ORTHO05D012343 1.3e-12 77.4 71 52.1
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 1.3e-12 77.4 71 50.7
TPR.G8421 Trifolium pratense HOM05D000347 ORTHO05D011666 1.3e-12 77.4 77 44.2
CANSAT35G0609 Cannabis sativa HOM05D000475 ORTHO05D000343 2.2e-12 76.6 67 52.2
Nitab4.5_0000355g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 2.2e-12 76.6 76 52.6
Manes.09G112000 Manihot esculenta HOM05D000475 ORTHO05D000343 3.8e-12 75.9 76 50.0
Aqoxy1G01277 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 4.9e-12 75.5 73 47.9
CSS0035168 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 4.9e-12 75.5 72 48.6
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 6.5e-12 75.1 135 34.1
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 6.5e-12 75.1 84 48.8
HanXRQChr16g0510201 Helianthus annuus HOM05D000475 ORTHO05D000343 1.1e-11 74.3 68 54.4
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 1.4e-11 73.9 73 49.3
CAN.G257.37 Capsicum annuum HOM05D000475 ORTHO05D011666 1.4e-11 73.9 45 66.7
MD04G1166900 Malus domestica HOM05D000475 ORTHO05D000343 1.9e-11 73.6 71 50.7
ATR0594G100 Amborella trichopoda HOM05D000475 ORTHO05D000343 3.2e-11 72.8 68 50.0
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 4.2e-11 72.4 69 49.3
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 5.5e-11 72.0 71 45.1
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 5.5e-11 72.0 71 45.1
Sopen10g027980 Solanum pennellii HOM05D001655 ORTHO05D000343 5.5e-11 72.0 78 50.0
ClCG10G022460 Citrullus lanatus HOM05D000475 ORTHO05D000343 7.1e-11 71.6 62 56.5
Sc01g0005730 Simmondsia chinensis HOM05D000475 ORTHO05D000343 7.1e-11 71.6 59 50.8
TWI63G0323 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 7.1e-11 71.6 96 37.5
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 9.3e-11 71.2 69 46.4
MD12G1180200 Malus domestica HOM05D000475 ORTHO05D000343 9.3e-11 71.2 76 50.0
EL10Ac5g12479 Beta vulgaris HOM05D000475 ORTHO05D000343 1.6e-10 70.5 97 39.2
Potri.016G127600 Populus trichocarpa HOM05D000475 ORTHO05D000343 2.1e-10 70.1 76 44.7
MBI15_g28858_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 2.7e-10 69.7 69 53.6
Prupe.6G285100 Prunus persica HOM05D000475 ORTHO05D000343 2.7e-10 69.7 67 50.7
Ciclev10011220m.g Citrus clementina HOM05D000475 ORTHO05D000343 3.5e-10 69.3 65 56.9
Lj1g0000774 Lotus japonicus HOM05D000475 ORTHO05D000343 3.5e-10 69.3 68 44.1
vmacro06936 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 3.5e-10 69.3 53 60.4
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 3.5e-10 69.3 69 47.8
Actinidia33894 Actinidia chinensis HOM05D000475 ORTHO05D000343 4.6e-10 68.9 71 49.3
CAN.G149.44 Capsicum annuum HOM05D000475 ORTHO05D011666 4.6e-10 68.9 50 58.0
ECA236G0948 Erigeron canadensis HOM05D000475 ORTHO05D000343 4.6e-10 68.9 54 59.3
FvH4_6g10591 Fragaria vesca HOM05D000475 ORTHO05D000343 4.6e-10 68.9 91 41.8
Aqoxy3G02296 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 6.1e-10 68.6 73 39.7
Nitab4.5_0003850g0020 Nicotiana tabacum HOM05D000475 ORTHO05D000343 6.1e-10 68.6 76 47.4
TPR.G21356 Trifolium pratense HOM05D000475 ORTHO05D011666 6.1e-10 68.6 123 36.6
Rhsim03G0148200 Rhododendron simsii HOM05D000475 ORTHO05D000343 7.9e-10 68.2 52 59.6
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 1.3e-09 67.4 64 43.8
PSO017G1695 Papaver somniferum HOM05D000475 ORTHO05D000343 1.3e-09 67.4 80 43.8
CiPaw.10G160700 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.8e-09 67.0 50 62.0
HanXRQChr16g0510211 Helianthus annuus HOM05D000475 ORTHO05D000343 1.8e-09 67.0 76 44.7
PSO541G4842 Papaver somniferum HOM05D000475 ORTHO05D000343 1.8e-09 67.0 88 37.5
CiPaw.02G196700 Carya illinoinensis HOM05D000475 ORTHO05D000343 3.9e-09 65.9 62 51.6
MELO3C009131.2 Cucumis melo HOM05D000475 ORTHO05D000343 3.9e-09 65.9 67 52.2
CsaV3_3G033400 Cucumis sativus L. HOM05D000475 ORTHO05D000343 3.9e-09 65.9 67 52.2
Sabra16G0130800 Salix brachista HOM05D000475 ORTHO05D000343 3.9e-09 65.9 76 43.4
AUR62030756 Chenopodium quinoa HOM05D000475 ORTHO05D000343 5.1e-09 65.5 52 57.7
ECA248G1682 Erigeron canadensis HOM05D000475 ORTHO05D000343 5.1e-09 65.5 58 50.0
Sed0026269 Sechium edule HOM05D000475 ORTHO05D000343 5.1e-09 65.5 59 52.5
unitig_62.g23470 Utricularia gibba HOM05D000475 ORTHO05D000343 5.1e-09 65.5 88 39.8
Eucgr.A00623 Eucalyptus grandis HOM05D000475 ORTHO05D000343 6.7e-09 65.1 61 52.5
AUR62036403 Chenopodium quinoa HOM05D000475 ORTHO05D000343 8.7e-09 64.7 52 57.7
Cc02_g05890 Coffea canephora HOM05D000475 ORTHO05D000343 8.7e-09 64.7 67 47.8
PSO675G2676 Papaver somniferum HOM05D000475 ORTHO05D014148 1.1e-08 64.3 88 38.6
SEGI_03593 Sequoiadendron giganteum HOM05D000475 ORTHO05D043974 1.5e-08 63.9 60 55.0
SEGI_07421 Sequoiadendron giganteum HOM05D000475 ORTHO05D011666 1.5e-08 63.9 60 55.0
Sed0000701 Sechium edule HOM05D000475 ORTHO05D000343 1.9e-08 63.5 58 50.0
Solyc10g076340.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.9e-08 63.5 58 48.3
Rhsim03G0148100 Rhododendron simsii HOM05D000475 ORTHO05D014148 3.3e-08 62.8 68 48.5
Hund10892 Selenicereus undatus HOM05D000475 ORTHO05D000343 3.3e-08 62.8 54 55.6
GSVIVG01032736001 Vitis vinifera HOM05D000475 ORTHO05D000343 3.3e-08 62.8 67 46.3
Carub.0006s0017 Capsella rubella HOM05D000475 ORTHO05D000343 5.7e-08 62.0 68 47.1
EL10Ac2g04912 Beta vulgaris HOM05D000475 ORTHO05D000343 7.4e-08 61.6 73 45.2
PSO675G0135 Papaver somniferum HOM05D000475 ORTHO05D000343 7.4e-08 61.6 51 51.0
ClCG11G005960 Citrullus lanatus HOM05D000475 ORTHO05D000343 9.7e-08 61.2 56 44.6
MELO3C008322.2 Cucumis melo HOM05D000475 ORTHO05D000343 9.7e-08 61.2 113 29.2
Lalb_Chr01g0023371 Lupinus albus HOM05D000475 ORTHO05D000343 1.3e-07 60.8 71 39.4
MELO3C033863.2 Cucumis melo HOM05D015228 ORTHO05D011666 1.6e-07 60.5 91 37.4
CANSAT56G0883 Cannabis sativa HOM05D000475 ORTHO05D000343 2.2e-07 60.1 65 47.7
TPR.G8213 Trifolium pratense HOM05D014746 ORTHO05D011720 2.8e-07 59.7 47 53.2
Migut.F00623 Erythranthe guttata HOM05D000475 ORTHO05D000343 3.7e-07 59.3 74 43.2
ECA238G4258 Erigeron canadensis HOM05D000475 ORTHO05D000343 4.8e-07 58.9 59 42.4
Glyma.01G126501 Glycine max HOM05D015228 ORTHO05D011666 8.2e-07 58.2 145 29.7
Nitab4.5_0002854g0040 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.1e-06 57.8 54 46.3
Potri.008G074200 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.4e-06 57.4 73 45.2
Zm00001eb282100 Zea mays HOM05D000475 ORTHO05D000343 1.4e-06 57.4 52 48.1
Cfa001257 Carpinus fangiana HOM05D000475 ORTHO05D000343 1.8e-06 57.0 68 39.7
QL08p064006 Quercus lobata HOM05D000475 ORTHO05D000343 1.8e-06 57.0 63 44.4
AUR62012320 Chenopodium quinoa HOM05D000475 ORTHO05D000343 3.1e-06 56.2 73 41.1
Sc11g0005450 Simmondsia chinensis HOM05D000475 ORTHO05D011666 3.1e-06 56.2 51 51.0
Os05g0164900 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 4.1e-06 55.8 50 50.0
Phvul.010G064000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 4.1e-06 55.8 147 28.6
Zm00001eb163290 Zea mays HOM05D000475 ORTHO05D000343 4.1e-06 55.8 62 45.2
HPP92_019706 Vanilla planifolia HOM05D000475 ORTHO05D000343 5.3e-06 55.5 50 48.0
Thecc.09G230200 Theobroma cacao HOM05D000475 ORTHO05D000343 6.9e-06 55.1 50 52.0
Aa31LG1G23280 Aethionema arabicum HOM05D000475 ORTHO05D000343 9.0e-06 54.7 63 44.4


User provided reference genes

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