Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 0.0e+00 1449.9 795 100.0
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.1e-278 963.4 739 73.3
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.4e-172 610.9 705 54.8
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.0e-168 595.5 711 56.3
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.7e-167 594.0 686 55.8
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 4.7e-165 585.9 781 50.6
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-155 553.9 753 50.5
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 9.9e-147 525.0 752 47.1
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.9e-146 522.7 740 50.3
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.6e-120 438.0 696 44.5
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.1e-116 425.2 685 45.4
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.3e-116 422.9 725 42.9
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.8e-114 416.8 719 43.9
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.9e-113 414.5 615 48.3
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.7e-109 400.2 718 42.6
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.4e-108 398.3 742 40.2
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 3.1e-108 397.1 731 41.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 5.0e-106 389.8 700 42.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.1e-105 388.7 716 42.7
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 8.0e-104 382.5 590 46.6
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.0e-103 382.1 713 42.4
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 3.0e-103 380.6 582 46.2
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.6e-102 377.5 607 45.0
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 9.7e-102 375.6 560 48.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.2e-101 374.4 753 39.6
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.8e-100 371.3 724 41.6
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.1e-100 370.2 601 45.6
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.0e-100 369.4 755 39.7
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 3.5e-99 367.1 757 39.5
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 5.9e-99 366.3 681 42.1
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.9e-97 361.3 582 44.8
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 3.2e-97 360.5 709 40.3
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 9.4e-97 359.0 468 51.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.1e-96 357.8 694 41.5
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 8.0e-96 355.9 715 39.3
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-93 348.6 675 40.9
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.2e-93 347.8 588 44.7
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 6.3e-93 346.3 694 41.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.1e-92 344.0 645 40.6
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.9e-91 339.7 781 37.5
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.5e-89 335.1 660 41.1
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.5e-89 333.2 659 41.1
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.2e-88 332.0 669 40.1
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.6e-88 331.6 651 41.3
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 6.1e-88 329.7 816 36.2
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.2e-86 325.5 707 39.0
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.0e-86 324.7 693 37.5
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.3e-85 322.0 712 39.2
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.7e-85 320.5 623 40.9
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.4e-84 318.5 705 38.4
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.8e-84 318.2 704 37.4
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 4.1e-84 317.0 724 38.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 4.1e-84 317.0 707 39.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 9.2e-84 315.8 689 40.2
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.6e-83 315.1 605 41.0
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.6e-83 315.1 801 37.3
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.9e-82 310.8 573 42.2
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 1.9e-81 308.1 701 38.9
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 2.1e-80 304.7 687 36.8
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 4.0e-79 300.4 698 37.1
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 5.2e-79 300.1 663 40.1
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.5e-78 298.5 545 41.8
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.9e-77 294.3 624 39.3
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.2e-76 290.8 691 38.6
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 7.8e-75 286.2 529 43.3
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.3e-74 285.4 696 37.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.3e-74 285.4 634 37.9
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.3e-74 285.4 650 37.4
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 5.0e-74 283.5 723 36.2
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 5.2e-71 273.5 683 36.3
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 4.4e-70 270.4 636 36.8
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 9.8e-70 269.2 651 35.6
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.4e-68 265.4 649 35.7
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 5.4e-68 263.5 299 55.2
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 9.2e-68 262.7 595 39.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.2e-67 262.3 667 35.8
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.2e-67 262.3 348 49.4
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.6e-67 261.9 579 38.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.0e-67 261.5 675 36.0
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 3.5e-67 260.8 622 37.6
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.5e-65 255.4 699 36.5
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 2.5e-65 254.6 625 36.6
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 4.7e-64 250.4 582 39.7
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 6.8e-63 246.5 620 36.0
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 7.5e-62 243.0 504 39.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 4.1e-60 237.3 700 33.1
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.0e-58 232.6 616 35.1
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.7e-53 215.3 618 35.6
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 2.9e-53 214.5 533 37.0
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 1.1e-52 212.6 549 36.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.7e-50 205.3 530 36.4
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 8.6e-50 203.0 632 32.9
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 4.3e-49 200.7 700 30.3
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 1.4e-47 195.7 650 30.5
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.2e-46 192.6 568 34.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.5e-46 192.2 745 29.3
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 2.2e-45 188.3 731 29.8
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 1.1e-44 186.0 576 32.5
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-44 186.0 571 31.5
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 2.4e-44 184.9 596 30.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.0e-42 179.5 555 31.9
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.0e-42 179.5 614 30.8
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.0e-42 179.5 555 31.9
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.7e-42 178.7 603 31.5
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.7e-42 178.7 629 29.1
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 8.7e-42 176.4 624 30.8
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-41 176.0 579 31.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.3e-41 174.5 421 37.3
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.2e-38 166.0 554 30.9
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.6e-38 164.9 589 30.4
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 4.5e-38 164.1 634 30.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 9.3e-36 156.4 626 29.6
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 5.3e-31 140.6 597 30.8
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.4e-30 137.9 337 35.0
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 6.4e-29 133.7 605 30.6
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 1.8e-26 125.6 428 33.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 3.9e-26 124.4 317 38.8
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.3e-24 119.4 383 32.1
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.8e-23 115.5 337 34.4
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.4e-23 115.2 290 35.2
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 2.2e-21 108.6 200 40.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 6.5e-21 107.1 304 35.5
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-20 106.3 304 35.2
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.8e-18 99.0 358 29.9
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 7.4e-17 93.6 423 29.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.1e-15 89.7 138 44.2
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 9.1e-07 60.1 424 26.7
Actinidia31091 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.2e-06 59.7 403 25.6
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 2.0e-06 58.9 126 39.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 7.7e-06 57.0 81 43.2


User provided reference genes

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