Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.1e-183 646.4 304 100.0
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 2.6e-140 502.3 330 75.5
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 3.2e-122 442.2 330 67.6
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 1.7e-102 376.7 341 58.1
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.7e-99 366.7 334 55.1
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 4.3e-98 362.1 334 56.0
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 7.3e-98 361.3 341 54.0
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 8.9e-96 354.4 339 54.0
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 1.5e-95 353.6 336 55.1
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 1.6e-92 343.6 334 53.6
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 4.6e-92 342.0 337 53.1
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 6.0e-92 341.7 333 52.3
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 1.7e-91 340.1 340 53.2
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 8.6e-91 337.8 328 51.5
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 1.1e-90 337.4 333 50.8
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 2.5e-90 336.3 339 52.8
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 1.8e-88 330.1 342 49.4
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 3.1e-88 329.3 340 52.1
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 1.5e-87 327.0 332 50.3
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 2.6e-87 326.2 319 52.7
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 2.6e-87 326.2 333 50.5
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 7.5e-87 324.7 342 49.1
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 9.8e-87 324.3 342 48.8
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.3e-86 323.9 329 50.2
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 3.7e-86 322.4 339 49.0
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.1e-85 320.9 337 49.3
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 1.4e-85 320.5 319 51.1
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 4.1e-85 318.9 329 49.2
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 9.2e-85 317.8 337 48.7
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 9.2e-85 317.8 331 49.5
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.2e-84 317.4 337 48.7
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 2.1e-84 316.6 345 47.8
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 2.1e-84 316.6 337 49.6
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.7e-84 316.2 337 48.7
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 4.6e-84 315.5 327 48.9
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 1.0e-83 314.3 333 50.5
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 1.3e-83 313.9 334 49.4
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.3e-83 313.9 340 48.2
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 5.1e-83 312.0 337 48.1
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 6.6e-83 311.6 345 47.0
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 8.6e-83 311.2 348 46.8
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 1.1e-82 310.8 350 47.4
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 3.3e-82 309.3 324 50.9
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 1.6e-81 307.0 342 47.1
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 2.1e-81 306.6 329 48.6
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 2.8e-81 306.2 334 47.6
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 3.6e-81 305.8 333 49.5
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 3.6e-81 305.8 333 49.5
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 3.6e-81 305.8 299 53.2
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 4.7e-81 305.4 336 48.5
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 1.4e-80 303.9 339 48.4
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 4.0e-80 302.4 331 49.5
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 6.8e-80 301.6 333 48.9
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 5.8e-79 298.5 332 47.9
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 9.9e-79 297.7 357 47.1
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 9.9e-79 297.7 349 46.4
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 1.7e-78 297.0 357 47.1
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 1.9e-77 293.5 332 48.5
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 4.1e-77 292.4 352 46.0
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 5.4e-77 292.0 331 46.5
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 9.2e-77 291.2 329 48.6
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 2.5e-74 283.1 286 50.3
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 5.6e-74 282.0 324 48.1
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 7.3e-74 281.6 339 44.5
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 4.7e-73 278.9 353 43.9
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 4.7e-73 278.9 329 44.7
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 4.7e-73 278.9 326 44.8
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 1.4e-72 277.3 275 52.0
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 1.4e-72 277.3 326 46.0
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 1.8e-72 276.9 342 45.0
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 2.4e-72 276.6 314 48.1
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 3.5e-68 262.7 329 44.7
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 9.3e-53 211.5 212 53.3
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.3e-49 201.1 107 86.0
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 1.5e-47 194.1 218 46.8
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 1.2e-39 167.9 163 50.9
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.9e-35 152.9 155 50.3
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.9e-34 150.6 305 32.1
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.9e-34 150.6 305 32.1
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 2.2e-25 120.6 321 27.1
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.8e-24 117.5 319 28.5
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 4.7e-20 102.8 250 28.8
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 5.7e-18 95.9 317 26.2
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 2.2e-17 94.0 303 24.4
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 4.8e-17 92.8 149 34.2
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.7e-14 84.3 331 24.5
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 6.5e-14 82.4 93 47.3
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.7e-12 77.0 66 53.0
ATR1156G059 Amborella trichopoda HOM05D007753 ORTHO05D009385 4.7e-12 76.3 139 38.8
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 6.1e-12 75.9 298 24.2
PGSC0003DMG400017736 Solanum tuberosum HOM05D005977 ORTHO05D007546 6.1e-12 75.9 323 25.1
TPR.G23831 Trifolium pratense HOM05D005977 ORTHO05D007546 6.1e-12 75.9 368 24.5
Psat7g088280 Pisum sativum HOM05D005977 ORTHO05D007546 1.8e-11 74.3 366 25.1
CAN.G809.67 Capsicum annuum HOM05D005977 ORTHO05D007546 2.3e-11 73.9 318 25.2
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.0e-11 73.6 325 24.0
DCAR_001274 Daucus carota HOM05D005977 ORTHO05D007546 3.0e-11 73.6 322 25.2
Lsat_1_v5_gn_8_106881 Lactuca sativa HOM05D005977 ORTHO05D007546 4.0e-11 73.2 385 25.5
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 4.0e-11 73.2 333 25.2
Cc10_g05770 Coffea canephora HOM05D007423 ORTHO05D009091 6.7e-11 72.4 295 22.7
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 6.7e-11 72.4 311 21.5
COL.COLO4_28509 Corchorus olitorius HOM05D007423 ORTHO05D009091 2.0e-10 70.9 310 23.9
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 2.0e-10 70.9 332 23.2
Solyc02g081670.1 Solanum lycopersicum HOM05D005977 ORTHO05D007546 2.0e-10 70.9 321 24.9
Sopen02g026280 Solanum pennellii HOM05D005977 ORTHO05D007546 2.6e-10 70.5 321 24.9
Thecc.08G089100 Theobroma cacao HOM05D007423 ORTHO05D009091 2.6e-10 70.5 289 24.6
Aa31LG9G16240 Aethionema arabicum HOM05D005977 ORTHO05D007546 3.3e-10 70.1 328 24.4
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 7.5e-10 68.9 326 23.3
HanXRQChr05g0128691 Helianthus annuus HOM05D002809 ORTHO05D004563 7.5e-10 68.9 313 22.4
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 7.5e-10 68.9 331 23.6
Manes.13G079162 Manihot esculenta HOM05D005977 ORTHO05D007546 9.7e-10 68.6 330 23.9
CDE05G2584 Ceratophyllum demersum HOM05D005977 ORTHO05D007546 1.3e-09 68.2 303 24.8
RcHm_v2.0_Chr5g0021071 Rosa chinensis HOM05D005977 ORTHO05D007546 1.3e-09 68.2 322 24.2
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 1.7e-09 67.8 344 23.3
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.7e-09 67.8 293 23.5
Potri.001G160900 Populus trichocarpa HOM05D005977 ORTHO05D007546 2.2e-09 67.4 346 22.3
SHI24793 Sapria himalayana HOM05D005977 ORTHO05D007546 2.2e-09 67.4 322 23.0
THA.LOC104798568 Tarenaya hassleriana HOM05D005977 ORTHO05D007546 2.8e-09 67.0 329 23.1
TAR371G1123 Trochodendron aralioides HOM05D002809 ORTHO05D004563 2.8e-09 67.0 312 22.8
arahy.Tifrunner.gnm1.ann1.N7CMLX Arachis hypogaea HOM05D005977 ORTHO05D007546 3.7e-09 66.6 322 23.3
Nitab4.5_0013176g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 3.7e-09 66.6 346 23.7
Sopen04g031440 Solanum pennellii HOM05D007423 ORTHO05D009091 4.8e-09 66.2 296 23.3
Nitab4.5_0006794g0010 Nicotiana tabacum HOM05D005977 ORTHO05D007546 6.3e-09 65.9 346 23.7
Dinv17569 Davidia involucrata HOM05D002809 ORTHO05D004563 8.2e-09 65.5 309 22.3
arahy.Tifrunner.gnm1.ann1.GTY4NG Arachis hypogaea HOM05D005977 ORTHO05D007546 1.1e-08 65.1 322 23.0
Oeu006522.1 Olea europaea HOM05D002809 ORTHO05D004563 1.1e-08 65.1 312 22.8
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 1.8e-08 64.3 311 22.5
CANSAT01G2827 Cannabis sativa HOM05D002809 ORTHO05D004563 2.4e-08 63.9 309 21.4
CiPaw.05G108500 Carya illinoinensis HOM05D002809 ORTHO05D004563 2.4e-08 63.9 313 23.0
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 3.1e-08 63.5 312 22.8
CiPaw.10G105300 Carya illinoinensis HOM05D005977 ORTHO05D007546 3.1e-08 63.5 323 23.5
Gorai.010G025800 Gossypium raimondii HOM05D007423 ORTHO05D009091 3.1e-08 63.5 290 24.5
Lalb_Chr13g0293451 Lupinus albus HOM05D005977 ORTHO05D007546 3.1e-08 63.5 334 24.6
Pp3c22_15730 Physcomitrium patens HOM05D003005 ORTHO05D009385 3.1e-08 63.5 236 25.4
Pp3c26_14690 Physcomitrium patens HOM05D004302 ORTHO05D004939 4.1e-08 63.2 289 22.8
Sabra03G0044600 Salix brachista HOM05D005977 ORTHO05D007546 4.1e-08 63.2 332 21.7
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 5.3e-08 62.8 65 52.3
Gohir.D06G021200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 7.0e-08 62.4 290 24.5
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 9.1e-08 62.0 300 21.7
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 9.1e-08 62.0 312 22.4
Rhsim07G0220000 Rhododendron simsii HOM05D007423 ORTHO05D009091 9.1e-08 62.0 291 24.1
Peaxi162Scf00048g00175 Petunia axillaris HOM05D005977 ORTHO05D007546 1.2e-07 61.6 346 24.6
SalBow8G5618 Salvia bowleyana HOM05D005977 ORTHO05D007546 1.2e-07 61.6 345 23.5
FAN25G0244 Fragaria x ananassa HOM05D005977 ORTHO05D007546 1.6e-07 61.2 326 22.4
Ciclev10031436m.g Citrus clementina HOM05D002809 ORTHO05D004563 2.0e-07 60.8 312 21.8
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.0e-07 60.8 139 31.7
Oeu035470.1 Olea europaea HOM05D002809 ORTHO05D004563 2.0e-07 60.8 278 21.9
Atru.chr10.348 Acer truncatum HOM05D005977 ORTHO05D007546 2.7e-07 60.5 319 22.3
FvH4_3g12960 Fragaria vesca HOM05D005977 ORTHO05D007546 2.7e-07 60.5 327 22.3
FAN11G3762 Fragaria x ananassa HOM05D005977 ORTHO05D007546 2.7e-07 60.5 327 22.9
Gohir.A06G024100 Gossypium hirsutum HOM05D007423 ORTHO05D009091 2.7e-07 60.5 290 23.8
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 2.7e-07 60.5 311 22.5
Gohir.A05G209900 Gossypium hirsutum HOM05D007423 ORTHO05D009091 3.5e-07 60.1 289 23.2
MBI16_g07988_MAGBIO Magnolia biondii HOM05D007423 ORTHO05D009091 3.5e-07 60.1 319 24.5
Potri.003G074100 Populus trichocarpa HOM05D005977 ORTHO05D007546 3.5e-07 60.1 332 21.7
Rhsim02G0171300 Rhododendron simsii HOM05D005977 ORTHO05D007546 3.5e-07 60.1 319 22.3
Nn1g04493 Nelumbo nucifera HOM05D007753 ORTHO05D009385 4.5e-07 59.7 75 41.3
CAN.G724.25 Capsicum annuum HOM05D007423 ORTHO05D009091 5.9e-07 59.3 298 24.2
FAN21G3750 Fragaria x ananassa HOM05D005977 ORTHO05D007546 5.9e-07 59.3 330 22.1
ATR1153G074 Amborella trichopoda HOM05D007423 ORTHO05D009091 7.7e-07 58.9 225 25.3
CiPaw.06G103600 Carya illinoinensis HOM05D002809 ORTHO05D004563 7.7e-07 58.9 311 21.5
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 7.7e-07 58.9 311 22.5
Duzib041G0474 Durio zibethinus HOM05D007423 ORTHO05D009091 7.7e-07 58.9 310 22.9
FAN16G0144 Fragaria x ananassa HOM05D005977 ORTHO05D007546 7.7e-07 58.9 327 22.6
Lalb_Chr12g0209141 Lupinus albus HOM05D005977 ORTHO05D007546 7.7e-07 58.9 332 23.2
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.0e-06 58.5 48 60.4
TWI73G0225 Tripterygium wilfordii HOM05D005977 ORTHO05D007546 1.0e-06 58.5 327 22.6
Glyma.05G134000 Glycine max HOM05D005977 ORTHO05D007546 1.3e-06 58.2 325 22.5
Atru.chr10.318 Acer truncatum HOM05D005977 ORTHO05D007546 1.7e-06 57.8 320 22.2
Manes.05G181850 Manihot esculenta HOM05D007423 ORTHO05D009091 1.7e-06 57.8 310 21.3
MELO3C010807.2 Cucumis melo HOM05D007423 ORTHO05D009091 2.2e-06 57.4 304 21.1
Gohir.D05G213200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 2.2e-06 57.4 289 22.5
Gorai.009G219800 Gossypium raimondii HOM05D007423 ORTHO05D009091 2.2e-06 57.4 289 22.5
Sabra02G0093200 Salix brachista HOM05D007423 ORTHO05D009091 2.2e-06 57.4 320 21.9
Actinidia20715 Actinidia chinensis HOM05D002809 ORTHO05D004563 2.9e-06 57.0 286 22.7
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 2.9e-06 57.0 298 23.5
CsaV3_2G026150 Cucumis sativus L. HOM05D007423 ORTHO05D009091 3.8e-06 56.6 306 21.6
Duzib093G1102 Durio zibethinus HOM05D007423 ORTHO05D009091 3.8e-06 56.6 266 24.4
FvH4_2g33130 Fragaria vesca HOM05D007423 ORTHO05D009091 3.8e-06 56.6 295 23.7
PGSC0003DMG400010617 Solanum tuberosum HOM05D007423 ORTHO05D009091 3.8e-06 56.6 296 22.0
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 3.8e-06 56.6 317 22.7
Pp3c19_12060 Physcomitrium patens HOM05D003005 ORTHO05D009385 8.5e-06 55.5 237 24.1
Pp3c5_28830 Physcomitrium patens HOM05D004302 ORTHO05D010190 8.5e-06 55.5 151 28.5
Sabra01G0131400 Salix brachista HOM05D005977 ORTHO05D007546 8.5e-06 55.5 329 22.8


User provided reference genes

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