Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 6.2e-93 344.0 158 100.0
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 8.4e-82 307.0 153 91.5
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 5.1e-71 271.2 158 79.1
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 5.0e-58 228.0 154 68.2
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 3.2e-57 225.3 154 67.5
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 3.2e-57 225.3 154 66.2
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 9.4e-57 223.8 152 66.4
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 9.4e-57 223.8 154 65.6
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 3.0e-55 218.8 150 69.3
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.1e-54 216.9 152 64.5
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 7.5e-54 214.2 153 65.4
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 9.7e-54 213.8 155 63.9
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.3e-53 213.4 152 63.2
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 8.2e-53 210.7 142 67.6
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.1e-52 210.3 155 62.6
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 1.1e-52 210.3 153 61.4
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 1.1e-52 210.3 153 62.7
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 3.1e-52 208.8 152 63.2
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 5.3e-52 208.0 155 61.9
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 5.3e-52 208.0 154 59.7
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.6e-51 206.5 154 59.7
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 2.0e-51 206.1 155 60.0
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 2.7e-51 205.7 154 59.1
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 3.5e-51 205.3 152 60.5
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 7.7e-51 204.1 153 60.8
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.0e-50 203.8 107 86.0
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 1.3e-50 203.4 168 60.1
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 1.7e-50 203.0 155 58.1
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 1.7e-50 203.0 149 58.4
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 6.5e-50 201.1 152 58.6
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 1.1e-49 200.3 154 57.8
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.5e-49 199.9 149 59.7
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.5e-49 199.1 149 61.7
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 4.2e-49 198.4 156 55.8
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 4.2e-49 198.4 154 59.7
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 5.5e-49 198.0 152 57.2
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 2.1e-48 196.1 150 60.7
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 6.1e-48 194.5 150 58.7
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 8.0e-48 194.1 150 59.3
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 8.0e-48 194.1 154 55.2
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 1.4e-47 193.4 150 60.7
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 4.0e-47 191.8 154 56.5
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 4.0e-47 191.8 154 57.8
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 5.2e-47 191.4 155 56.1
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 8.8e-47 190.7 154 53.2
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 2.0e-46 189.5 156 56.4
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.6e-46 189.1 149 59.7
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 2.6e-46 189.1 150 59.3
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 4.4e-46 188.3 155 56.8
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 1.7e-45 186.4 149 59.1
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 4.8e-45 184.9 156 54.5
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 4.8e-45 184.9 156 54.5
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 1.8e-44 183.0 155 55.5
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 1.6e-43 179.9 154 51.3
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 2.7e-43 179.1 153 53.6
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 2.7e-43 179.1 153 51.6
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 2.7e-43 179.1 158 52.5
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 5.9e-43 177.9 158 53.8
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 7.7e-43 177.6 154 55.2
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 5.0e-42 174.9 156 53.2
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 6.5e-42 174.5 156 51.9
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 8.5e-42 174.1 158 52.5
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 1.5e-41 173.3 150 52.7
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 2.1e-40 169.5 151 49.7
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 3.6e-40 168.7 150 54.0
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 3.6e-40 168.7 150 54.0
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 1.0e-39 167.2 118 71.2
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 1.4e-39 166.8 152 50.0
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 4.0e-39 165.2 157 50.3
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 3.4e-38 162.2 156 50.0
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 1.7e-37 159.8 161 47.2
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 1.7e-37 159.8 143 53.1
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 1.7e-37 159.8 129 58.9
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 8.3e-37 157.5 150 50.0
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 1.5e-33 146.7 152 50.7
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 1.8e-23 113.2 83 67.5
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 3.3e-17 92.4 154 35.7
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 9.5e-17 90.9 59 72.9
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.6e-16 90.1 159 33.3
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.2e-14 84.0 149 33.6
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.1e-12 77.4 160 31.9
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 1.1e-12 77.4 154 29.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.9e-12 76.6 160 31.2
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.5e-09 67.0 47 68.1


User provided reference genes

Program Settings