Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0100900 Rhododendron simsii HOM05D004686 ORTHO05D005988 1.5e-122 443.0 236 100.0
Rhsim03G0100800 Rhododendron simsii HOM05D004686 ORTHO05D005988 8.5e-70 267.7 197 75.1
Dinv09596 Davidia involucrata HOM05D004686 ORTHO05D005988 6.1e-44 181.8 196 55.6
Dinv02032 Davidia involucrata HOM05D004686 ORTHO05D005988 1.0e-43 181.0 192 56.8
Actinidia34718 Actinidia chinensis HOM05D004686 ORTHO05D005988 1.4e-43 180.6 201 53.7
Rhsim09G0142900 Rhododendron simsii HOM05D004686 ORTHO05D005988 4.0e-43 179.1 198 52.5
Dinv11852 Davidia involucrata HOM05D004686 ORTHO05D005988 6.8e-43 178.3 170 60.6
TAR636G3245 Trochodendron aralioides HOM05D004686 ORTHO05D005988 1.4e-40 170.6 197 52.3
Nitab4.5_0001437g0190 Nicotiana tabacum HOM05D004686 ORTHO05D005988 3.1e-40 169.5 181 53.6
Nn5g28600 Nelumbo nucifera HOM05D004686 ORTHO05D005988 4.1e-40 169.1 197 51.8
Nitab4.5_0003774g0030 Nicotiana tabacum HOM05D004686 ORTHO05D005988 5.4e-40 168.7 180 53.9
TAR633G2407 Trochodendron aralioides HOM05D004686 ORTHO05D005988 9.1e-40 167.9 187 51.3
FAN26G2913 Fragaria x ananassa HOM05D004686 ORTHO05D005988 1.6e-39 167.2 205 51.7
ECA238G0678 Erigeron canadensis HOM05D004686 ORTHO05D005988 2.0e-39 166.8 181 55.2
MD04G1028700 Malus domestica HOM05D004686 ORTHO05D005988 2.7e-39 166.4 200 51.0
Gohir.D05G288800 Gossypium hirsutum HOM05D004686 ORTHO05D005988 4.5e-39 165.6 201 52.2
Gorai.009G303900 Gossypium raimondii HOM05D004686 ORTHO05D005988 4.5e-39 165.6 201 52.2
HanXRQChr11g0342241 Helianthus annuus HOM05D004686 ORTHO05D005988 5.9e-39 165.2 198 53.5
Lsat_1_v5_gn_2_104981 Lactuca sativa HOM05D004686 ORTHO05D005988 1.3e-38 164.1 194 52.6
Ciclev10032367m.g Citrus clementina HOM05D004686 ORTHO05D005988 1.7e-38 163.7 200 51.5
Gohir.A05G287600 Gossypium hirsutum HOM05D004686 ORTHO05D005988 2.3e-38 163.3 201 51.2
RcHm_v2.0_Chr2g0118911 Rosa chinensis HOM05D004686 ORTHO05D005988 2.3e-38 163.3 139 63.3
Thecc.10G107700 Theobroma cacao HOM05D004686 ORTHO05D005988 2.9e-38 162.9 194 52.1
FAN28G2368 Fragaria x ananassa HOM05D004686 ORTHO05D005988 3.8e-38 162.5 205 50.7
Prupe.2G079800 Prunus persica HOM05D004686 ORTHO05D005988 8.6e-38 161.4 202 50.5
PGSC0003DMG400019464 Solanum tuberosum HOM05D004686 ORTHO05D005988 1.5e-37 160.6 181 53.6
HanXRQChr07g0194231 Helianthus annuus HOM05D004686 ORTHO05D005988 1.9e-37 160.2 194 50.5
Aqoxy3G00701 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 2.5e-37 159.8 203 52.2
FvH4_1g23510 Fragaria vesca HOM05D004686 ORTHO05D005988 2.5e-37 159.8 157 58.0
AUR62037089 Chenopodium quinoa HOM05D004686 ORTHO05D005988 3.3e-37 159.5 166 55.4
Eucgr.G02697 Eucalyptus grandis HOM05D004686 ORTHO05D005988 4.3e-37 159.1 139 60.4
Peaxi162Scf00173g00068 Petunia axillaris HOM05D004686 ORTHO05D005988 4.3e-37 159.1 182 51.6
CANSAT56G3264 Cannabis sativa HOM05D004686 ORTHO05D005988 7.2e-37 158.3 196 50.5
Oeu030507.2 Olea europaea HOM05D004686 ORTHO05D005988 7.2e-37 158.3 176 52.8
Sopen11g003040 Solanum pennellii HOM05D004686 ORTHO05D005988 7.2e-37 158.3 177 54.2
Aqoxy2G01234 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 9.5e-37 157.9 201 50.2
FAN19G3154 Fragaria x ananassa HOM05D004686 ORTHO05D005988 9.5e-37 157.9 163 56.4
QL04p044815 Quercus lobata HOM05D004686 ORTHO05D005988 2.1e-36 156.8 143 59.4
Duzib128G0508 Durio zibethinus HOM05D004686 ORTHO05D005988 2.8e-36 156.4 144 59.7
GSVIVG01011272001 Vitis vinifera HOM05D004686 ORTHO05D005988 2.8e-36 156.4 118 67.8
Cfa007809 Carpinus fangiana HOM05D004686 ORTHO05D005988 3.6e-36 156.0 193 51.8
arahy.Tifrunner.gnm1.ann1.GZ7TSK Arachis hypogaea HOM05D004686 ORTHO05D005988 6.1e-36 155.2 147 59.2
arahy.Tifrunner.gnm1.ann1.R2EQ4U Arachis hypogaea HOM05D004686 ORTHO05D005988 6.1e-36 155.2 147 59.2
Carub.0003s2093 Capsella rubella HOM05D004686 ORTHO05D005988 6.1e-36 155.2 193 51.8
Lj2C31G19 Lonicera japonica HOM05D004686 ORTHO05D005988 6.1e-36 155.2 120 66.7
PGR142G2157 Punica granatum HOM05D004686 ORTHO05D005988 6.1e-36 155.2 165 53.9
Solyc11g007120.2 Solanum lycopersicum HOM05D004686 ORTHO05D005988 6.1e-36 155.2 177 53.7
CiPaw.13G038400 Carya illinoinensis HOM05D004686 ORTHO05D005988 8.0e-36 154.8 161 54.0
Sed0018572 Sechium edule HOM05D004686 ORTHO05D005988 8.0e-36 154.8 167 53.3
HPP92_001974 Vanilla planifolia HOM05D004686 ORTHO05D005988 8.0e-36 154.8 137 62.8
Sp3g18970 Schrenkiella parvula HOM05D004686 ORTHO05D005988 1.0e-35 154.5 200 48.5
Cpa.g.sc563.1 Carica papaya HOM05D004686 ORTHO05D005988 1.4e-35 154.1 129 64.3
AT3G20970 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 1.8e-35 153.7 161 55.9
Manes.10G058150 Manihot esculenta HOM05D004686 ORTHO05D005988 1.8e-35 153.7 156 56.4
CAN.G730.34 Capsicum annuum HOM05D004686 ORTHO05D005988 3.0e-35 152.9 180 49.4
unitig_0.g763 Utricularia gibba HOM05D004686 ORTHO05D005988 4.0e-35 152.5 132 58.3
Atru.chr12.1003 Acer truncatum HOM05D004686 ORTHO05D005988 6.8e-35 151.8 160 54.4
MELO3C019892.2 Cucumis melo HOM05D004686 ORTHO05D005988 6.8e-35 151.8 118 67.8
CsaV3_6G004170 Cucumis sativus L. HOM05D004686 ORTHO05D005988 6.8e-35 151.8 118 67.8
THA.LOC104816877 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 6.8e-35 151.8 189 50.3
ATR0820G097 Amborella trichopoda HOM05D004686 ORTHO05D005988 8.9e-35 151.4 161 54.0
EL10Ac5g11629 Beta vulgaris HOM05D004686 ORTHO05D005988 8.9e-35 151.4 167 51.5
ClCG08G008200 Citrullus lanatus HOM05D004686 ORTHO05D005988 8.9e-35 151.4 118 67.8
Phvul.007G008000 Phaseolus vulgaris HOM05D004686 ORTHO05D005988 1.2e-34 151.0 156 54.5
SalBow6G2690 Salvia bowleyana HOM05D004686 ORTHO05D005988 1.2e-34 151.0 132 59.1
VMungo0720G1764 Vigna mungo HOM05D004686 ORTHO05D005988 1.5e-34 150.6 131 61.8
Haze_14265 Corylus avellana HOM05D004686 ORTHO05D005988 2.0e-34 150.2 118 66.9
Atru.chr4.937 Acer truncatum HOM05D004686 ORTHO05D005988 2.6e-34 149.8 198 47.0
CARHR096860 Cardamine hirsuta HOM05D004686 ORTHO05D005988 2.6e-34 149.8 163 54.6
Thhalv10021272m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 2.6e-34 149.8 158 54.4
Zm00001eb346110 Zea mays HOM05D004686 ORTHO05D005988 2.6e-34 149.8 158 53.8
Ah.12g062170 Amaranthus hybridus HOM05D004686 ORTHO05D005988 3.4e-34 149.4 168 53.0
Glyma.20G242200 Glycine max HOM05D004686 ORTHO05D005988 3.4e-34 149.4 145 58.6
Potri.010G237400 Populus trichocarpa HOM05D004686 ORTHO05D005988 3.4e-34 149.4 158 55.7
Sc20g0001200 Simmondsia chinensis HOM05D004686 ORTHO05D005988 3.4e-34 149.4 158 52.5
Lj5g0008296 Lotus japonicus HOM05D004686 ORTHO05D005988 4.4e-34 149.1 183 48.1
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 4.4e-34 149.1 197 48.2
C05p43110 Brassica napus HOM05D004686 ORTHO05D005988 5.7e-34 148.7 199 46.7
Migut.F00905 Erythranthe guttata HOM05D004686 ORTHO05D005988 5.7e-34 148.7 130 60.0
Os05g0155300 Oryza sativa ssp. japonica HOM05D004686 ORTHO05D005988 5.7e-34 148.7 120 64.2
PSO339G5017 Papaver somniferum HOM05D004686 ORTHO05D005988 7.5e-34 148.3 137 56.2
BolC5t33041H Brassica oleracea HOM05D004686 ORTHO05D005988 9.8e-34 147.9 200 46.5
BraA05t21664Z Brassica rapa HOM05D004686 ORTHO05D005988 9.8e-34 147.9 201 48.8
A06p02520 Brassica napus HOM05D004686 ORTHO05D005988 1.3e-33 147.5 180 48.9
MSTRG.9090 Avicennia marina HOM05D004686 ORTHO05D005988 1.7e-33 147.1 133 57.9
TWI63G0038 Tripterygium wilfordii HOM05D004686 ORTHO05D005988 1.7e-33 147.1 118 66.1
SGA_v2.0_scaffold62G21346 Striga asiatica HOM05D004686 ORTHO05D005988 2.9e-33 146.4 120 64.2
arahy.Tifrunner.gnm1.ann1.XFSN2Q Arachis hypogaea HOM05D004686 ORTHO05D005988 3.7e-33 146.0 142 57.0
BcaB06g26171 Brassica carinata HOM05D004686 ORTHO05D005988 4.9e-33 145.6 197 48.7
BcaC05g28207 Brassica carinata HOM05D004686 ORTHO05D005988 4.9e-33 145.6 200 48.0
A05p27770 Brassica napus HOM05D004686 ORTHO05D005988 4.9e-33 145.6 141 57.4
Cc02_g09830 Coffea canephora HOM05D004686 ORTHO05D005988 4.9e-33 145.6 145 56.6
Thhalv10011711m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 6.4e-33 145.2 193 48.2
THA.LOC104817910 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 8.3e-33 144.8 187 49.2
TPR.G10412 Trifolium pratense HOM05D004686 ORTHO05D005988 8.3e-33 144.8 135 58.5
BraA06t23459Z Brassica rapa HOM05D004686 ORTHO05D005988 1.4e-32 144.1 181 48.6
Lalb_Chr06g0164101 Lupinus albus HOM05D004686 ORTHO05D005988 1.4e-32 144.1 147 58.5
Medtr1g069215 Medicago truncatula HOM05D004686 ORTHO05D005988 1.4e-32 144.1 135 58.5
Psat6g239000 Pisum sativum HOM05D004686 ORTHO05D005988 1.4e-32 144.1 155 52.3
BcaB07g33585 Brassica carinata HOM05D004686 ORTHO05D005988 2.4e-32 143.3 136 57.4
Potri.008G022000 Populus trichocarpa HOM05D004686 ORTHO05D005988 2.4e-32 143.3 130 58.5
BolC6t35767H Brassica oleracea HOM05D004686 ORTHO05D005988 3.2e-32 142.9 185 48.1
CARHR041540 Cardamine hirsuta HOM05D004686 ORTHO05D005988 3.2e-32 142.9 138 56.5
DCAR_019313 Daucus carota HOM05D004686 ORTHO05D005988 3.2e-32 142.9 117 64.1
PSO384G4844 Papaver somniferum HOM05D004686 ORTHO05D005988 3.2e-32 142.9 198 44.9
arahy.Tifrunner.gnm1.ann1.N4KLNP Arachis hypogaea HOM05D004686 ORTHO05D005988 5.4e-32 142.1 142 56.3
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 5.4e-32 142.1 179 48.6
AT1G51390 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 7.0e-32 141.7 120 60.8
Carub.0001s4026 Capsella rubella HOM05D004686 ORTHO05D005988 7.0e-32 141.7 160 51.9
Medtr3g073070 Medicago truncatula HOM05D004686 ORTHO05D005988 9.2e-32 141.4 119 61.3
AL1G59240 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 1.2e-31 141.0 120 60.8
BcaC08g43308 Brassica carinata HOM05D004686 ORTHO05D005988 1.2e-31 141.0 185 47.6
C06p06550 Brassica napus HOM05D004686 ORTHO05D005988 1.2e-31 141.0 185 47.6
Sp1g38060 Schrenkiella parvula HOM05D004686 ORTHO05D005988 3.5e-31 139.4 134 57.5
Aa31LG10G3560 Aethionema arabicum HOM05D004686 ORTHO05D005988 7.8e-31 138.3 141 55.3
Mapoly0010s0052 Marchantia polymorpha HOM05D004686 ORTHO05D005988 1.3e-30 137.5 144 54.2
Sabra08G0014900 Salix brachista HOM05D004686 ORTHO05D005988 2.3e-30 136.7 109 64.2
Oeu030509.1 Olea europaea HOM05D004686 ORTHO05D005988 3.9e-30 136.0 226 41.6
SMO119G0422 Selaginella moellendorffii HOM05D004686 ORTHO05D005988 6.6e-30 135.2 120 58.3
Pp3c3_25460 Physcomitrium patens HOM05D004686 ORTHO05D005988 1.6e-28 130.6 120 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2258 Anthoceros agrestis HOM05D004686 ORTHO05D005988 6.2e-28 128.6 149 51.0
CBR_g48305 Chara braunii HOM05D004686 ORTHO05D005988 1.5e-26 124.0 120 55.0
SEGI_01464 Sequoiadendron giganteum HOM05D004686 ORTHO05D005988 2.6e-26 123.2 102 62.7
Pp3c10_14710 Physcomitrium patens HOM05D004686 ORTHO05D005988 1.7e-25 120.6 178 43.8
BcaC05g26273 Brassica carinata HOM05D004686 ORTHO05D005988 1.1e-24 117.9 97 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1090 Anthoceros agrestis HOM05D004686 ORTHO05D005988 1.4e-24 117.5 96 62.5
Migut.F01616 Erythranthe guttata HOM05D004686 ORTHO05D005988 5.4e-24 115.5 157 48.4
Cre12.g504150 Chlamydomonas reinhardtii HOM05D004686 ORTHO05D005988 1.7e-22 110.5 119 47.9
C07p01900 Brassica napus HOM05D004686 ORTHO05D005988 3.0e-22 109.8 103 54.4
CDE08G1288 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 6.6e-22 108.6 159 44.0
BcaC06g36644 Brassica carinata HOM05D004686 ORTHO05D005988 1.4e-19 100.9 118 49.2
BolC7t40596H Brassica oleracea HOM05D004686 ORTHO05D005988 1.4e-19 100.9 118 49.2
PRCOL_00006553 Prasinoderma coloniale HOM05D004686 ORTHO05D005988 2.6e-18 96.7 118 43.2
MCO10G342 Micromonas commoda HOM05D004686 ORTHO05D005988 4.4e-18 95.9 119 47.9
C05p22850 Brassica napus HOM05D004686 ORTHO05D005988 2.9e-17 93.2 77 62.3
AUR62038365 Chenopodium quinoa HOM05D004686 ORTHO05D005988 2.9e-17 93.2 59 72.9
CSS0027430 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 6.4e-17 92.0 56 76.8
Actinidia31100 Actinidia chinensis HOM05D004686 ORTHO05D005988 2.1e-15 87.0 97 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3971 Anthoceros agrestis HOM05D004686 ORTHO05D005988 2.7e-15 86.7 89 49.4
Haze_26891 Corylus avellana HOM05D004686 ORTHO05D005988 5.6e-13 79.0 138 40.6
CDE06G1789 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 3.6e-12 76.3 181 35.9
SHI21636 Sapria himalayana HOM05D004686 ORTHO05D005988 1.2e-10 71.2 91 45.1
C09p31040 Brassica napus HOM05D004686 ORTHO05D027932 2.2e-09 67.0 76 51.3
BolC9t55963H Brassica oleracea HOM05D004686 ORTHO05D027932 2.2e-09 67.0 76 51.3
C05p35820 Brassica napus HOM05D004686 ORTHO05D027932 1.1e-08 64.7 74 51.4
BolC5t32300H Brassica oleracea HOM05D004686 ORTHO05D027932 1.1e-08 64.7 74 51.4
Psat3g105760 Pisum sativum HOM05D004686 ORTHO05D005988 3.9e-06 56.2 40 65.0


User provided reference genes

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