Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.0e-201 704.5 347 100.0
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.1e-48 197.2 235 50.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 4.9e-42 176.0 231 46.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.1e-36 158.3 243 42.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.0e-36 155.2 243 41.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 4.5e-35 152.9 260 38.5
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 9.0e-28 128.6 235 38.3
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 6.5e-26 122.5 191 40.8
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 6.5e-26 122.5 217 40.1
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.5e-25 120.6 234 35.0
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 4.2e-25 119.8 234 33.3
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 4.2e-25 119.8 237 34.6
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 5.5e-25 119.4 234 34.6
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.2e-24 118.2 240 34.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.2e-24 118.2 237 34.6
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.1e-24 117.5 234 34.2
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.7e-24 117.1 238 34.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 3.6e-24 116.7 241 33.2
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.4e-23 114.8 235 34.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.8e-23 114.4 243 33.7
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.3e-23 114.0 241 34.0
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 5.1e-23 112.8 241 33.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 5.1e-23 112.8 241 34.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.5e-22 111.3 236 34.3
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.5e-22 111.3 238 32.8
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.5e-22 111.3 241 33.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 2.5e-22 110.5 234 33.3
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.3e-22 109.8 238 32.4
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 9.7e-22 108.6 236 33.9
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 9.7e-22 108.6 238 32.4
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 2.2e-21 107.5 233 33.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 3.7e-21 106.7 234 32.1
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 8.2e-21 105.5 242 32.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 8.2e-21 105.5 238 31.9
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.1e-20 105.1 241 32.0
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.1e-20 105.1 235 33.2
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.4e-20 104.8 247 32.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.1e-20 103.2 230 33.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.2e-19 101.7 231 32.9
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.2e-19 101.7 265 30.2
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.5e-19 101.3 234 31.6
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.4e-19 100.1 203 33.0
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 7.7e-19 99.0 265 29.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 7.7e-19 99.0 233 33.5
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.2e-18 97.4 265 29.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.8e-18 96.7 234 29.9
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.8e-18 96.7 237 30.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.5e-17 94.0 234 28.2
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 4.2e-17 93.2 251 31.1
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 4.2e-17 93.2 127 40.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 7.2e-17 92.4 158 36.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.2e-16 91.7 155 38.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.1e-16 90.9 234 29.1
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.1e-16 90.9 158 34.8
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.6e-16 90.1 256 29.3
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 4.7e-16 89.7 143 39.2
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 6.1e-16 89.4 236 29.2
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.0e-15 88.6 130 40.0
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.4e-15 88.2 234 29.5
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.4e-15 88.2 130 39.2
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.8e-15 87.8 126 40.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.0e-15 87.0 134 39.6
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 3.9e-15 86.7 125 40.8
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 5.1e-15 86.3 131 39.7
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 6.7e-15 85.9 158 34.2
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 6.7e-15 85.9 125 40.0
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 6.7e-15 85.9 132 37.9
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 6.7e-15 85.9 125 40.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 8.8e-15 85.5 132 38.6
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.1e-14 85.1 149 38.3
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.5e-14 84.7 130 40.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.0e-14 84.3 131 38.9
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.0e-14 84.3 131 38.9
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.6e-14 84.0 131 35.1
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.6e-14 84.0 154 36.4
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.3e-14 83.6 234 29.1
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 5.7e-14 82.8 129 39.5
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 5.7e-14 82.8 153 36.6
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 5.7e-14 82.8 142 36.6
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.3e-13 81.6 131 35.9
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.7e-13 81.3 154 36.4
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.8e-13 80.5 246 28.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.7e-13 80.1 233 27.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 3.7e-13 80.1 130 36.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 4.8e-13 79.7 163 31.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 6.3e-13 79.3 142 33.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 6.3e-13 79.3 261 26.8
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 6.3e-13 79.3 129 38.8
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 1.8e-12 77.8 154 33.8
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 3.1e-12 77.0 240 26.7
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 4.1e-12 76.6 228 27.6
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 5.3e-12 76.3 233 26.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 5.3e-12 76.3 204 30.4
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.3e-12 76.3 132 35.6
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 7.0e-12 75.9 237 28.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 7.0e-12 75.9 233 26.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 9.1e-12 75.5 122 35.2
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-11 75.1 233 26.6
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.2e-11 75.1 256 25.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.5e-11 74.7 163 29.4
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.0e-11 74.3 141 33.3
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.6e-11 73.9 238 27.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.2e-10 70.9 256 25.0
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.2e-10 70.9 141 31.9
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 4.2e-09 66.6 39 82.1
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.7e-08 63.9 116 33.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 3.6e-08 63.5 132 31.8
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 5.2e-07 59.7 39 69.2
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 6.7e-07 59.3 114 32.5
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.0e-06 57.8 52 51.9
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.3e-06 57.0 39 66.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.3e-06 57.0 39 66.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 3.3e-06 57.0 39 66.7
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 9.7e-06 55.5 63 54.0
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 9.7e-06 55.5 39 61.5
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 9.7e-06 55.5 152 29.6
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 9.7e-06 55.5 152 29.6
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 9.7e-06 55.5 152 29.6
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 9.7e-06 55.5 30 73.3


User provided reference genes

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