Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 6.5e-277 956.8 507 100.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 4.5e-153 545.4 510 65.3
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.0e-152 544.3 510 65.3
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 8.8e-149 531.2 507 63.5
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.3e-139 498.4 498 59.8
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-138 497.7 501 61.3
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.3e-136 490.7 426 68.5
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.2e-132 477.6 498 58.6
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.2e-131 473.4 504 57.1
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.2e-131 473.4 508 56.7
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 5.4e-130 468.8 511 57.5
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 3.0e-128 463.0 497 57.9
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 8.6e-128 461.5 495 57.6
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.9e-127 460.3 493 58.2
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 5.6e-127 458.8 498 56.2
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 4.7e-126 455.7 423 62.9
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.1e-125 454.5 511 56.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 4.0e-125 452.6 446 61.0
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 5.8e-124 448.7 512 55.5
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.7e-123 447.2 474 57.6
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.7e-123 447.2 474 57.6
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.2e-123 446.8 501 56.1
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.9e-123 446.4 505 55.8
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 4.9e-123 445.7 503 57.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-122 443.7 474 57.4
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 9.2e-122 441.4 447 60.0
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 9.2e-122 441.4 485 56.1
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.7e-121 439.9 502 54.4
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.1e-119 434.5 491 55.8
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.9e-119 433.7 500 53.6
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 5.6e-119 432.2 489 53.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 9.5e-119 431.4 437 59.3
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.6e-118 430.6 495 54.3
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.1e-118 430.3 419 61.8
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.3e-117 426.8 483 55.5
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.1e-117 426.4 448 57.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 4.0e-117 426.0 441 57.4
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 4.0e-117 426.0 434 58.8
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 2.6e-116 423.3 434 58.5
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 9.9e-116 421.4 500 53.2
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 9.9e-116 421.4 423 59.6
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 2.9e-115 419.9 498 52.0
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 3.7e-115 419.5 419 60.4
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.9e-115 419.1 424 59.4
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 8.4e-115 418.3 506 51.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.9e-114 417.2 442 57.2
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 4.1e-114 416.0 496 51.8
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 9.2e-114 414.8 445 56.6
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 1.6e-113 414.1 490 53.5
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.6e-112 408.3 495 50.7
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 8.6e-112 408.3 513 52.0
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.1e-111 407.9 506 50.0
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.3e-111 406.0 496 51.6
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.8e-110 403.3 477 53.7
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 6.2e-110 402.1 500 51.0
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.6e-108 396.7 446 54.7
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.3e-107 394.4 509 51.3
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.8e-107 392.9 430 54.9
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 4.9e-107 392.5 478 52.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 4.9e-107 392.5 478 52.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 6.4e-107 392.1 446 54.9
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 4.2e-106 389.4 499 49.9
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 4.2e-106 389.4 508 49.4
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 9.3e-106 388.3 443 54.9
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 1.2e-105 387.9 433 55.2
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.1e-105 387.1 434 55.8
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 6.0e-105 385.6 436 55.3
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 1.0e-104 384.8 478 52.5
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 3.0e-104 383.3 504 48.2
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 5.1e-104 382.5 433 55.4
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-103 381.3 507 49.1
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.2e-102 375.6 486 49.2
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 9.0e-101 371.7 491 49.3
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 1.3e-99 367.9 493 50.9
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 6.4e-99 365.5 430 53.7
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.9e-98 364.0 485 48.2
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 9.3e-98 361.7 428 50.2
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.3e-95 353.2 446 48.4
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.8e-93 347.4 509 45.8
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.5e-92 344.4 437 49.2
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 7.6e-92 342.0 363 54.5
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 2.9e-91 340.1 442 49.8
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.8e-91 339.7 515 44.9
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 6.7e-88 328.9 408 51.2
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 8.1e-86 322.0 424 48.3
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.8e-85 320.9 451 45.9
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.2e-82 309.7 486 44.2
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.7e-81 307.0 435 44.6
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.8e-78 297.0 392 48.5
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 8.2e-78 295.4 339 54.0
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.2e-76 291.6 262 63.0
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.9e-74 284.3 272 62.9
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 4.3e-71 273.1 215 69.3
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 7.4e-71 272.3 292 58.9
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.8e-70 270.4 397 47.1
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.3e-67 261.5 493 40.8
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.9e-66 257.7 267 56.9
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 3.0e-64 250.4 335 45.4
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.5e-63 248.1 440 40.0
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.3e-62 245.0 209 65.1
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 2.8e-62 243.8 183 67.8
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 1.4e-58 231.5 298 51.3
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 8.5e-51 205.7 316 46.8
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.5e-50 204.9 416 35.8
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.8e-46 190.7 363 38.3
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 2.4e-45 187.6 310 43.9
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.7e-43 181.4 127 73.2
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.7e-43 181.4 166 62.0
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 2.5e-42 177.6 313 41.2
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 7.2e-42 176.0 409 33.5
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.1e-41 174.5 183 52.5
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 4.7e-41 173.3 202 49.0
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 6.1e-41 172.9 428 32.5
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 6.1e-41 172.9 410 34.1
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 2.2e-38 164.5 135 65.2
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.7e-35 154.8 308 39.9
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.0e-31 141.4 123 61.8
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-31 140.6 179 43.6
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 7.5e-31 139.4 102 76.5
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 2.8e-30 137.5 89 77.5
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.4e-29 135.2 188 43.1
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 9.2e-29 132.5 410 30.5
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 3.5e-28 130.6 104 72.1
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.5e-28 130.2 415 31.3
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 2.9e-27 127.5 104 65.4
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-26 124.0 81 80.2
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.1e-25 121.3 116 61.2
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 1.4e-21 108.6 127 50.4
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.2e-21 105.9 67 83.6
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.2e-20 105.5 74 75.7
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.2e-20 105.5 68 83.8
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 3.5e-20 104.0 157 43.9
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 4.6e-20 103.6 368 26.6
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 5.9e-20 103.2 70 75.7
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.7e-19 101.7 63 82.5
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.0e-19 100.9 173 38.2
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 1.2e-17 95.5 96 52.1
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.1e-17 94.7 431 27.8
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 2.8e-17 94.4 60 83.3
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 2.8e-17 94.4 77 62.3
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.6e-17 94.0 422 27.5
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.1e-16 90.9 430 24.0
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 6.8e-16 89.7 204 30.4
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 7.5e-15 86.3 64 71.9
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 3.7e-14 84.0 109 47.7
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 7.0e-13 79.7 62 67.7
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.2e-12 79.0 55 78.2
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.6e-12 77.0 107 39.3
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 6.0e-12 76.6 59 69.5
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.4e-08 65.5 55 69.1
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 6.8e-08 63.2 35 85.7
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 9.8e-07 59.3 271 29.5
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.7e-06 58.5 227 27.3
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 2.2e-06 58.2 260 25.4
arahy.Tifrunner.gnm1.ann1.BUF90N Arachis hypogaea HOM05D000943 ORTHO05D008314 8.3e-06 56.2 271 28.8
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 8.3e-06 56.2 68 55.9


User provided reference genes

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