Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.9e-242 842.0 407 100.0
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.2e-181 638.6 404 76.2
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.2e-181 637.1 404 76.2
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.2e-180 636.7 404 76.0
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.6e-180 636.3 404 76.0
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.0e-180 636.0 404 76.5
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.0e-180 636.0 404 76.5
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.0e-180 636.0 404 76.2
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-180 634.8 404 76.2
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-180 634.0 404 76.2
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.8e-180 634.0 404 76.2
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-179 633.6 404 76.2
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.6e-179 630.6 404 75.7
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-178 629.8 404 76.0
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.3e-171 606.7 350 82.9
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.3e-171 606.7 405 70.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 4.3e-170 601.7 402 70.6
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 9.5e-170 600.5 402 70.9
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.2e-169 600.1 403 71.2
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 1.6e-169 599.7 403 69.7
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 4.7e-169 598.2 374 74.6
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 8.1e-169 597.4 401 69.8
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.2e-167 593.6 399 71.4
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.5e-167 593.2 401 69.6
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 2.6e-167 592.4 403 70.0
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 8.3e-166 587.4 401 69.3
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 1.1e-165 587.0 403 68.2
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.4e-165 586.6 403 69.2
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 2.4e-165 585.9 404 69.3
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 4.1e-165 585.1 401 68.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 5.4e-165 584.7 400 70.0
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 7.1e-165 584.3 403 67.7
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.2e-164 583.6 403 67.7
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 4.6e-164 581.6 401 69.1
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 6.0e-164 581.3 394 70.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.0e-163 580.5 403 67.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.3e-163 580.1 401 69.6
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 3.0e-163 578.9 401 69.3
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 3.9e-163 578.6 402 67.9
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 5.1e-163 578.2 401 69.3
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.1e-162 577.0 402 66.4
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 4.3e-162 575.1 370 72.7
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 7.3e-162 574.3 405 66.9
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 7.3e-162 574.3 405 66.9
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 9.5e-162 573.9 401 68.1
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 2.8e-161 572.4 401 67.8
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 4.7e-161 571.6 402 67.9
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 8.1e-161 570.9 401 67.1
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 2.4e-160 569.3 400 67.0
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.4e-160 569.3 401 68.3
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 6.8e-160 567.8 403 67.0
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 1.5e-159 566.6 401 66.8
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 9.9e-159 563.9 372 70.4
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.4e-157 560.1 401 67.1
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.9e-157 559.7 393 67.7
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 3.2e-157 558.9 401 65.6
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 4.2e-157 558.5 399 66.7
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.6e-156 556.6 403 66.0
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.7e-156 555.8 354 73.2
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 1.0e-155 553.9 398 66.6
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.3e-155 553.5 360 71.1
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.7e-155 553.1 401 65.8
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 3.9e-155 552.0 401 65.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 3.9e-155 552.0 401 65.6
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.9e-154 549.7 403 65.3
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 2.5e-154 549.3 402 64.9
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 2.5e-154 549.3 401 65.6
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 2.5e-154 549.3 398 65.1
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 5.6e-154 548.1 402 64.4
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 2.1e-153 546.2 400 65.5
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 8.1e-153 544.3 403 64.8
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 8.1e-153 544.3 404 66.1
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.4e-152 543.5 401 64.8
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 1.8e-152 543.1 403 64.8
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.8e-152 543.1 399 66.2
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 3.1e-152 542.3 401 64.8
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 6.9e-152 541.2 401 64.3
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 2.0e-151 539.7 401 65.1
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 5.8e-151 538.1 401 66.1
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 2.4e-149 532.7 401 64.3
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 2.4e-149 532.7 349 72.5
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 3.2e-149 532.3 402 64.7
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 4.6e-148 528.5 402 63.9
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.2e-141 505.8 391 62.7
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.0e-139 500.7 406 61.6
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.3e-139 500.4 401 59.6
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 7.4e-138 494.6 406 57.9
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 2.8e-137 492.7 402 60.0
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.3e-134 483.8 404 60.1
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 3.0e-131 472.6 409 57.7
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 2.2e-126 456.4 294 74.5
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 4.6e-124 448.7 402 58.0
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 4.1e-120 435.6 376 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 3.2e-117 426.0 364 56.3
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 1.4e-109 400.6 329 60.5
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.1e-101 374.4 353 53.3
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 5.0e-94 349.0 372 48.9
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 3.2e-93 346.3 293 59.0
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 4.0e-91 339.3 209 76.1
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 5.4e-80 302.4 417 41.7
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.9e-70 270.0 348 42.8
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.3e-62 243.8 302 43.4
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 5.2e-59 232.6 175 62.9
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 7.5e-58 228.8 409 36.2
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 3.4e-50 203.4 401 34.4
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 6.2e-36 156.0 323 31.0
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.3e-30 137.5 124 51.6
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 7.3e-29 132.5 95 69.5
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 2.4e-27 127.5 295 32.2
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 1.6e-20 104.8 70 70.0
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 4.5e-18 96.7 303 28.7
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 6.7e-14 82.8 59 62.7


User provided reference genes

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