Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.2e-118 429.5 306 100.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.4e-70 268.1 347 50.4
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.6e-66 254.6 248 80.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 4.3e-58 229.2 359 43.2
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.4e-47 193.0 346 39.9
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.1e-44 183.7 237 47.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.0e-43 179.9 306 40.5
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.7e-42 175.6 274 55.5
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.4e-42 175.3 288 42.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.3e-41 172.2 300 38.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 5.3e-40 169.1 348 35.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-40 169.1 288 41.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.5e-39 166.4 274 40.9
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.5e-39 166.4 274 40.9
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.2e-36 157.9 149 57.7
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.0e-35 153.3 224 42.4
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.6e-34 150.2 274 38.3
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.6e-34 150.2 349 34.7
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.4e-34 149.4 155 54.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 5.7e-34 149.1 270 40.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.7e-33 147.5 214 43.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 3.7e-33 146.4 164 53.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.8e-33 146.0 275 38.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.1e-32 144.8 305 36.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.8e-32 144.1 144 54.9
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.1e-32 142.9 160 51.2
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 7.0e-32 142.1 143 54.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-31 141.4 275 37.8
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.6e-31 140.2 335 33.1
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.0e-30 138.3 144 55.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.7e-30 137.5 147 53.7
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-30 137.5 135 55.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.7e-30 137.5 138 54.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.9e-30 136.7 176 46.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.9e-30 136.7 165 50.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.5e-30 135.6 138 54.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.1e-29 134.8 134 53.7
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.1e-29 134.8 156 50.0
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.1e-29 134.8 147 53.1
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.2e-29 133.3 130 58.5
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.2e-29 132.9 133 53.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 9.4e-29 131.7 131 56.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.6e-28 131.0 159 47.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.6e-28 131.0 210 39.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.6e-28 131.0 130 57.7
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.1e-28 130.6 141 50.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.1e-28 130.6 141 50.4
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.1e-28 130.6 193 44.0
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 3.6e-28 129.8 144 52.1
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.7e-28 129.4 147 51.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 6.1e-28 129.0 143 50.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 6.1e-28 129.0 131 56.5
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 8.0e-28 128.6 211 38.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 8.0e-28 128.6 147 51.7
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-27 128.3 134 51.5
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-27 128.3 134 51.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.0e-27 128.3 264 36.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.4e-27 127.9 179 44.1
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.4e-27 127.9 144 50.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.0e-27 126.7 146 51.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.0e-27 126.7 162 48.8
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.0e-27 126.7 347 32.6
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.0e-27 126.3 149 53.0
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.0e-27 126.3 186 43.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.2e-27 125.9 174 43.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.2e-27 125.9 133 51.1
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.2e-27 125.9 146 48.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 6.8e-27 125.6 160 49.4
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.2e-26 124.8 144 50.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.5e-26 124.4 112 61.6
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 2.0e-26 124.0 112 61.6
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.0e-26 124.0 198 44.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.6e-26 123.6 154 49.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.6e-26 123.6 162 47.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-26 123.6 160 45.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.4e-26 123.2 157 45.9
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 5.7e-26 122.5 148 48.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 5.7e-26 122.5 148 48.0
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.7e-25 119.8 215 37.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.7e-25 119.8 286 32.9
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.7e-25 119.8 113 57.5
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 4.8e-25 119.4 147 46.9
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 6.3e-25 119.0 147 46.9
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 6.3e-25 119.0 149 45.0
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.3e-25 119.0 308 30.8
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.3e-25 118.6 141 51.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-24 118.2 142 52.1
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.1e-24 118.2 134 50.0
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.8e-24 117.5 274 35.0
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 5.4e-24 115.9 199 39.7
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.0e-24 115.5 125 52.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.1e-24 115.2 178 46.1
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 9.1e-24 115.2 136 49.3
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.6e-23 114.4 138 50.7
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.0e-23 114.0 280 31.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.7e-23 113.6 284 31.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.7e-23 113.6 126 54.0
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.5e-23 113.2 143 46.9
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.5e-23 113.2 276 32.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.7e-23 112.1 134 49.3
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.7e-23 112.1 134 49.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.3e-22 111.3 278 32.4
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.3e-22 111.3 128 48.4
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.3e-22 111.3 158 48.7
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.2e-21 106.7 157 40.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.2e-20 104.8 160 41.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.1e-20 104.0 177 39.5
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.7e-20 103.6 285 30.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 6.1e-20 102.4 234 33.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.3e-19 100.5 118 49.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.0e-19 100.1 125 49.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.0e-19 99.8 149 43.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.0e-19 99.8 381 27.0
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.8e-19 99.0 306 29.4
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.5e-18 97.8 123 47.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.5e-18 97.8 123 47.2
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.5e-18 97.8 286 30.4
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.5e-18 97.8 135 42.2
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-18 96.7 102 53.9
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 5.7e-18 95.9 123 46.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 9.8e-18 95.1 123 46.3
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 9.8e-18 95.1 123 46.3
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 6.3e-17 92.4 285 29.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.1e-16 91.7 285 34.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.8e-16 90.9 115 47.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 9.1e-16 88.6 104 47.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-15 88.2 123 43.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-15 87.4 83 56.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.7e-15 85.5 133 39.1
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.3e-14 84.7 83 56.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 5.5e-13 79.3 69 60.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.1e-12 77.4 126 42.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 8.9e-11 72.0 125 39.2
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.5e-10 71.2 90 45.6
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.0e-10 70.9 90 47.8
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.7e-09 67.8 92 45.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.4e-08 64.7 171 33.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 4.1e-08 63.2 135 34.8
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 5.4e-08 62.8 96 41.7
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.2e-08 62.0 154 33.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.3e-06 57.4 76 43.4
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 5.0e-06 56.2 141 36.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 5.0e-06 56.2 76 46.1
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 6.6e-06 55.8 87 39.1
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 6.6e-06 55.8 87 39.1


User provided reference genes

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