Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.4e-165 586.3 314 100.0
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 1.8e-112 409.8 310 74.8
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 1.2e-111 407.1 317 68.1
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 5.0e-110 401.7 311 69.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 8.5e-110 401.0 320 66.9
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 8.5e-110 401.0 316 67.4
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 8.5e-110 401.0 314 68.2
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.9e-109 399.8 310 67.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 1.9e-109 399.8 313 69.0
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 2.5e-109 399.4 342 64.0
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 5.5e-109 398.3 310 66.8
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 7.2e-109 397.9 322 66.1
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 2.1e-108 396.4 307 68.1
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.1e-108 396.4 311 66.6
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.7e-108 396.0 310 66.5
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 3.6e-108 395.6 317 66.9
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 6.1e-108 394.8 311 65.9
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 1.4e-107 393.7 310 67.7
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 2.0e-106 389.8 312 65.7
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 4.4e-106 388.7 303 69.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 4.9e-105 385.2 230 79.6
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.8e-104 383.3 228 81.1
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 3.1e-104 382.5 313 64.5
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 4.1e-104 382.1 313 64.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.1e-104 382.1 303 68.6
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.4e-104 381.7 303 68.3
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 5.4e-104 381.7 303 68.3
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 7.0e-104 381.3 303 68.6
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.5e-103 378.6 311 64.3
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 5.9e-103 378.3 294 66.0
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.7e-102 376.7 201 90.0
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 6.6e-102 374.8 310 65.5
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.1e-101 374.0 310 68.7
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.5e-101 373.6 309 63.1
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.5e-101 373.6 312 65.1
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.5e-101 372.9 303 64.7
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.5e-101 372.9 308 64.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 4.3e-101 372.1 313 64.9
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 5.6e-101 371.7 223 80.3
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.2e-101 371.3 319 62.4
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 9.5e-101 370.9 303 64.4
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.2e-100 370.5 299 68.2
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.8e-100 369.4 248 73.4
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.8e-100 369.4 248 73.4
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.8e-100 369.4 244 74.6
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.0e-99 367.5 310 62.9
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.3e-99 366.3 318 67.3
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 3.0e-99 365.9 221 79.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 4.0e-99 365.5 312 69.6
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 5.2e-99 365.2 312 62.5
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.2e-98 364.0 234 74.8
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.2e-98 364.0 235 76.2
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.5e-98 363.6 215 80.5
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 2.0e-98 363.2 318 61.0
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.0e-98 363.2 228 77.6
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.4e-98 362.5 228 77.2
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 7.5e-98 361.3 318 62.3
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 7.5e-98 361.3 310 62.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 1.3e-97 360.5 292 63.7
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.3e-97 360.5 316 63.0
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.7e-97 360.1 230 76.1
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.9e-97 359.4 225 75.6
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.9e-97 359.4 325 60.0
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 8.3e-97 357.8 326 60.7
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 1.8e-96 356.7 326 59.8
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.2e-96 355.9 224 76.3
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 7.0e-96 354.8 314 60.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 9.2e-96 354.4 315 61.9
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 9.2e-96 354.4 310 61.9
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 2.0e-95 353.2 315 60.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 2.7e-95 352.8 235 77.0
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.7e-95 352.8 229 74.2
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 3.5e-95 352.4 304 64.1
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 4.6e-95 352.1 225 75.6
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 4.6e-95 352.1 303 62.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.6e-95 352.1 230 73.9
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 7.8e-95 351.3 314 59.6
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 3.0e-94 349.4 317 61.2
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.9e-94 349.0 303 62.0
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.9e-94 349.0 303 62.0
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 6.6e-94 348.2 228 72.8
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 2.5e-93 346.3 296 61.8
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.3e-93 345.9 231 73.6
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 2.1e-92 343.2 217 74.2
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 2.2e-89 333.2 309 59.5
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 6.4e-89 331.6 312 59.3
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 8.3e-89 331.3 221 71.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.9e-88 330.1 302 61.9
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 2.4e-88 329.7 211 72.5
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 3.0e-86 322.8 211 75.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 5.2e-75 285.4 220 60.9
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 6.8e-75 285.0 249 63.1
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 5.6e-69 265.4 215 59.1
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.2e-68 261.9 217 59.9
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 2.4e-64 250.0 162 74.7
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 7.8e-63 245.0 213 54.0
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 3.9e-62 242.7 149 78.5
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.5e-61 240.7 149 77.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.9e-59 231.9 143 79.0
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 6.9e-59 231.9 167 73.1
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 2.0e-58 230.3 226 50.0
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 2.0e-58 230.3 223 57.0
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.4e-58 229.6 235 50.6
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.1e-56 224.6 230 57.8
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 5.6e-53 212.2 191 51.8
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.6e-50 201.8 156 67.9
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 7.4e-45 185.3 126 71.4
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.1e-44 183.7 123 73.2
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 5.3e-43 179.1 117 75.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 3.7e-36 156.4 95 78.9
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 8.2e-36 155.2 83 91.6
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 8.2e-36 155.2 83 91.6
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.5e-21 107.8 170 42.4
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.8e-19 100.9 83 60.2
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 3.4e-18 96.7 222 27.9
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 7.0e-11 72.4 54 68.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.7e-09 67.8 136 26.5
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 6.5e-09 65.9 48 68.8
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.5e-08 64.7 42 69.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.6e-07 61.2 168 25.0
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.6e-07 61.2 51 52.9
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 2.1e-07 60.8 225 23.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.7e-07 60.5 225 21.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.6e-07 60.1 224 20.5
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 3.6e-07 60.1 229 22.3
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.7e-07 59.7 57 56.1
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.0e-06 58.5 154 24.7
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.8e-06 57.8 73 47.9
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.8e-06 57.8 73 47.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.3e-06 57.4 168 22.6
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.3e-06 57.4 220 20.5
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 6.7e-06 55.8 202 20.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.7e-06 55.8 220 20.0


User provided reference genes

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