Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 4.6e-152 541.2 274 100.0
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 1.8e-84 316.6 280 65.0
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 5.4e-76 288.5 285 58.6
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 2.7e-75 286.2 259 60.2
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 5.6e-73 278.5 268 57.8
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 7.3e-73 278.1 279 57.0
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 1.2e-72 277.3 264 57.6
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 1.6e-72 276.9 278 57.9
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 2.8e-72 276.2 275 58.5
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 4.7e-72 275.4 278 57.2
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 3.1e-71 272.7 252 57.9
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 6.8e-71 271.6 244 61.5
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 6.8e-71 271.6 278 56.5
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 7.5e-70 268.1 221 63.3
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 4.9e-69 265.4 255 57.6
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 1.1e-68 264.2 266 56.4
Ah.08g211220 Amaranthus hybridus HOM05D007539 ORTHO05D009315 1.9e-68 263.5 279 54.8
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 1.9e-68 263.5 251 58.2
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 9.2e-68 261.2 244 57.8
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 1.2e-67 260.8 223 61.0
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 1.2e-67 260.8 250 59.2
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 1.6e-67 260.4 221 61.1
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 1.6e-67 260.4 249 57.0
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 4.6e-67 258.8 225 60.4
vmacro07349 Vaccinium macrocarpon HOM05D007539 ORTHO05D009315 4.6e-67 258.8 196 68.4
EL10Ac7g16719 Beta vulgaris HOM05D007539 ORTHO05D009315 7.8e-67 258.1 274 54.0
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 3.0e-66 256.1 247 57.9
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 3.0e-66 256.1 275 53.5
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 3.0e-66 256.1 249 58.6
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 3.9e-66 255.8 273 53.5
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.1e-65 254.2 274 53.3
Nitab4.5_0000725g0080 Nicotiana tabacum HOM05D007539 ORTHO05D009315 1.1e-65 254.2 270 55.6
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 1.9e-65 253.4 223 60.5
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 1.9e-65 253.4 223 60.5
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 3.3e-65 252.7 223 60.1
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 3.3e-65 252.7 237 59.5
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 3.3e-65 252.7 277 55.6
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 4.3e-65 252.3 234 59.0
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 4.3e-65 252.3 286 53.5
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 5.6e-65 251.9 272 54.0
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 5.6e-65 251.9 223 59.2
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 1.6e-64 250.4 248 55.6
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 1.6e-64 250.4 241 56.8
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 2.8e-64 249.6 244 57.0
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 6.2e-64 248.4 275 52.7
SalBow5G4705 Salvia bowleyana HOM05D007539 ORTHO05D009315 6.2e-64 248.4 271 53.5
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 8.1e-64 248.1 248 56.5
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 1.4e-63 247.3 223 59.6
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 2.4e-63 246.5 273 52.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.4e-63 246.5 201 67.7
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 3.1e-63 246.1 224 59.4
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 5.2e-63 245.4 248 55.2
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 8.9e-63 244.6 242 55.8
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.2e-62 244.2 239 54.4
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 1.5e-62 243.8 278 52.5
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 2.0e-62 243.4 224 59.4
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 3.4e-62 242.7 224 59.4
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 3.4e-62 242.7 237 56.5
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 3.4e-62 242.7 277 55.2
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 5.8e-62 241.9 203 67.0
Prupe.7G122900 Prunus persica HOM05D007539 ORTHO05D009315 7.6e-62 241.5 256 53.5
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 9.9e-62 241.1 287 52.6
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 6.4e-61 238.4 275 52.0
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 8.4e-61 238.0 238 53.4
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 1.9e-60 236.9 271 51.7
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 2.4e-60 236.5 286 51.7
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 3.2e-60 236.1 275 52.4
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 9.2e-60 234.6 286 51.4
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.7e-59 233.0 286 50.7
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 6.0e-59 231.9 181 66.9
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 6.0e-59 231.9 245 51.8
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 7.8e-59 231.5 243 53.1
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 1.0e-58 231.1 246 53.7
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 1.3e-58 230.7 246 51.6
CARHR209760 Cardamine hirsuta HOM05D007539 ORTHO05D009315 2.3e-58 229.9 230 53.9
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 3.0e-58 229.6 143 77.6
ATR0950G005 Amborella trichopoda HOM05D007539 ORTHO05D009315 3.9e-58 229.2 250 52.0
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 5.1e-58 228.8 255 52.5
HPP92_014788 Vanilla planifolia HOM05D007539 ORTHO05D009315 8.6e-58 228.0 220 55.0
CDE02G3922 Ceratophyllum demersum HOM05D007539 ORTHO05D009315 1.9e-57 226.9 241 52.3
Thhalv10014552m.g Eutrema salsugineum HOM05D007539 ORTHO05D009315 3.3e-57 226.1 230 53.9
Zm00001eb175880 Zea mays HOM05D007539 ORTHO05D009315 3.3e-57 226.1 225 53.3
Os08g0560600 Oryza sativa ssp. japonica HOM05D007539 ORTHO05D009315 2.1e-56 223.4 272 50.7
Ah.12g063350 Amaranthus hybridus HOM05D007539 ORTHO05D009315 4.7e-56 222.2 192 59.4
Lalb_Chr02g0155351 Lupinus albus HOM05D007539 ORTHO05D009315 1.1e-52 211.1 204 55.9
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 3.5e-51 206.1 205 59.0
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 5.1e-50 202.2 197 58.9
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 1.1e-49 201.1 340 41.5
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 1.2e-46 191.0 192 53.6
AUR62040192 Chenopodium quinoa HOM05D007539 ORTHO05D009315 2.5e-41 173.3 175 52.0
Lsat_1_v5_gn_2_18420 Lactuca sativa HOM05D007539 ORTHO05D009315 5.6e-41 172.2 175 52.6
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 4.9e-37 159.1 270 40.0
Carub.0006s0239 Capsella rubella HOM05D007539 ORTHO05D009315 3.0e-34 149.8 175 48.0
AL6G13050 Arabidopsis lyrata HOM05D007539 ORTHO05D009315 5.1e-34 149.1 175 47.4
FAN09G1910 Fragaria x ananassa HOM05D007539 ORTHO05D009315 1.0e-29 134.8 141 53.9
Mapoly0014s0214 Marchantia polymorpha HOM05D007539 ORTHO05D009315 1.4e-28 131.0 249 36.9
AagrBONN_evm.TU.Sc2ySwM_117.3355 Anthoceros agrestis HOM05D007539 ORTHO05D009315 7.1e-28 128.6 223 33.6
QL07p041388 Quercus lobata HOM05D007539 ORTHO05D009315 1.8e-26 124.0 74 74.3
CBR_g37238 Chara braunii HOM05D007539 ORTHO05D009315 3.7e-16 89.7 241 29.0
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.8e-16 89.4 79 74.7
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.8e-16 89.4 97 62.9
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 5.3e-15 85.9 80 72.5
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-13 80.1 117 47.0
CSS0035774 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.5e-09 67.8 98 54.1
CSS0039126 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.5e-09 67.8 98 54.1
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 6.3e-08 62.4 50 66.0


User provided reference genes

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