Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0076500 Rhododendron simsii HOM05D003360 ORTHO05D003759 1.4e-42 176.4 129 100.0
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 4.0e-13 78.6 112 48.2
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 1.2e-09 67.0 76 48.7
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 2.0e-09 66.2 78 57.7
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 2.7e-09 65.9 75 52.0
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 2.7e-09 65.9 77 50.6
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 3.5e-09 65.5 77 50.6
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 3.5e-09 65.5 77 50.6
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 4.6e-09 65.1 70 54.3
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 6.0e-09 64.7 77 48.1
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 6.0e-09 64.7 75 50.7
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 6.0e-09 64.7 75 52.0
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 1.0e-08 63.9 75 49.3
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.0e-08 63.9 73 53.4
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 1.7e-08 63.2 76 47.4
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 1.7e-08 63.2 75 50.7
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 2.3e-08 62.8 77 48.1
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.3e-08 62.8 77 54.5
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.3e-08 62.8 77 54.5
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 2.3e-08 62.8 75 46.7
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 3.0e-08 62.4 77 53.2
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 3.9e-08 62.0 73 49.3
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 5.0e-08 61.6 76 47.4
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 5.0e-08 61.6 75 49.3
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 6.6e-08 61.2 75 50.7
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 8.6e-08 60.8 73 53.4
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 1.5e-07 60.1 75 50.7
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 1.5e-07 60.1 77 50.6
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 1.9e-07 59.7 76 51.3
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 1.9e-07 59.7 76 47.4
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 2.5e-07 59.3 70 50.0
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 3.3e-07 58.9 75 46.7
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 4.3e-07 58.5 114 39.5
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 4.3e-07 58.5 70 61.4
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 5.6e-07 58.2 75 48.0
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 5.6e-07 58.2 77 49.4
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 7.3e-07 57.8 75 48.0
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 7.3e-07 57.8 75 48.0
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 7.3e-07 57.8 75 48.0
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 7.3e-07 57.8 36 83.3
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 7.3e-07 57.8 75 49.3
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 7.3e-07 57.8 75 49.3
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 7.3e-07 57.8 29 93.1
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 9.5e-07 57.4 29 93.1
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 9.5e-07 57.4 29 93.1
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
DCAR_009156 Daucus carota HOM05D003360 ORTHO05D003759 1.2e-06 57.0 78 41.0
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
Phvul.007G229000 Phaseolus vulgaris HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
Psat6g080880 Pisum sativum HOM05D003360 ORTHO05D003759 1.2e-06 57.0 29 93.1
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.2e-06 57.0 73 49.3
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 1.6e-06 56.6 29 89.7
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 1.6e-06 56.6 29 89.7
Lalb_Chr02g0154991 Lupinus albus HOM05D003360 ORTHO05D003759 2.1e-06 56.2 29 89.7
Nitab4.5_0001725g0010 Nicotiana tabacum HOM05D003360 ORTHO05D003759 2.1e-06 56.2 75 45.3
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.8e-06 55.8 29 89.7
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 3.6e-06 55.5 29 89.7
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 3.6e-06 55.5 29 89.7
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 4.7e-06 55.1 51 62.7
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 6.2e-06 54.7 75 46.7
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 6.2e-06 54.7 78 46.2
HanXRQChr02g0051411 Helianthus annuus HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 89.7
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 89.7
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 6.2e-06 54.7 29 86.2
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 6.2e-06 54.7 86 60.5
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 8.1e-06 54.3 29 86.2
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 8.1e-06 54.3 29 86.2
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 8.1e-06 54.3 29 86.2


User provided reference genes

Program Settings